OTUbase: an R infrastructure package for operational taxonomic unit data

被引：12

作者：

Beck, Daniel ^{[1
]}

Settles, Matt ^{[1
]}

Foster, James A. ^{[1
]}

机构：

[1] Univ Idaho, Dept Biol Sci, Moscow, ID 83843 USA

来源：

BIOINFORMATICS | 2011年 / 27卷 / 12期

基金：

美国国家卫生研究院;

关键词：

DIVERSITY;

D O I：

10.1093/bioinformatics/btr196

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

OTUbase is an R package designed to facilitate the analysis of operational taxonomic unit (OTU) data and sequence classification (taxonomic) data. Currently there are programs that will cluster sequence data into OTUs and/or classify sequence data into known taxonomies. However, there is a need for software that can take the summarized output of these programs and organize it into easily accessed and manipulated formats. OTUbase provides this structure and organization within R, to allow researchers to easily manipulate the data with the rich library of R packages currently available for additional analysis.

引用

页码：1700 / 1701

页数：2

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