Protein complexes:: structure prediction challenges for the 21st century

被引:68
作者
Aloy, P [1 ]
Pichaud, M [1 ]
Russell, RB [1 ]
机构
[1] European Mol Biol Lab, D-69117 Heidelberg, Germany
关键词
D O I
10.1016/j.sbi.2005.01.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Only a tiny fraction of the many hundreds of known protein complexes are also of known three-dimensional structure. The experimental difficulties surrounding structure determination of complexes make methods that are able to predict structures paramount. The challenge of predicting complex structures is daunting and raises many issues that need to be addressed. To produce the best models, new prediction methods have to somehow combine partial structures with a mixed bag of experimental data, including interactions and low-resolution electron microscopy images.
引用
收藏
页码:15 / 22
页数:8
相关论文
共 41 条
  • [1] Ten thousand interactions for the molecular biologist
    Aloy, P
    Russell, RB
    [J]. NATURE BIOTECHNOLOGY, 2004, 22 (10) : 1317 - 1321
  • [2] Predictions without templates: New folds, secondary structure, and contacts in CASP5
    Aloy, P
    Stark, A
    Hadley, S
    Russell, RB
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 : 436 - 456
  • [3] The relationship between sequence and interaction divergence in proteins
    Aloy, P
    Ceulemans, H
    Stark, A
    Russell, RB
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2003, 332 (05) : 989 - 998
  • [4] InterPreTS: protein Interaction Prediction through Tertiary Structure
    Aloy, P
    Russell, RB
    [J]. BIOINFORMATICS, 2003, 19 (01) : 161 - 162
  • [5] A complex prediction:: three-dimensional model of the yeast exosome
    Aloy, P
    Ciccarelli, FD
    Leutwein, C
    Gavin, AC
    Superti-Furga, G
    Bork, P
    Böttcher, B
    Russell, RB
    [J]. EMBO REPORTS, 2002, 3 (07) : 628 - 635
  • [6] Interrogating protein interaction networks through structural biology
    Aloy, P
    Russell, RB
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (09) : 5896 - 5901
  • [7] The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    Ban, N
    Nissen, P
    Hansen, J
    Moore, PB
    Steitz, TA
    [J]. SCIENCE, 2000, 289 (5481) : 905 - 920
  • [8] Rosetta predictions in CASP5: Successes, failures, and prospects for complete automation
    Bradley, P
    Chivian, D
    Meiler, J
    Misura, KMS
    Rohl, CA
    Schief, WR
    Wedemeyer, WJ
    Schueler-Furman, O
    Murphy, P
    Schonbrun, J
    Strauss, CEM
    Baker, D
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 53 : 457 - 468
  • [9] Prediction of local structure in proteins using a library of sequence-structure motifs
    Bystroff, C
    Baker, D
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1998, 281 (03) : 565 - 577
  • [10] THE RELATION BETWEEN THE DIVERGENCE OF SEQUENCE AND STRUCTURE IN PROTEINS
    CHOTHIA, C
    LESK, AM
    [J]. EMBO JOURNAL, 1986, 5 (04) : 823 - 826