ProServer: a simple, extensible Perl DAS server

被引：25

作者：

Finn, Robert D. ^{[1
]}

Stalker, James W. ^{[1
]}

Jackson, David K. ^{[1
]}

Kulesha, Eugene ^{[1
]}

Clements, Jody ^{[1
]}

Pettett, Roger ^{[1
]}

机构：

[1] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England

来源：

BIOINFORMATICS | 2007年 / 23卷 / 12期

基金：

英国惠康基金; 英国医学研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btl650

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The increasing size and complexity of biological databases has led to a growing trend to federate rather than duplicate them. In order to share data between federated databases, protocols for the exchange mechanism must be developed. One such data exchange protocol that is widely used is the Distributed Annotation System (DAS). For example, DAS has enabled small experimental groups to integrate their data into the Ensembl genome browser. We have developed ProServer, a simple, lightweight, Perl-based DAS server that does not depend on a separate HTTP server. The ProServer package is easily extensible, allowing data to be served from almost any underlying data model. Recent additions to the DAS protocol have enabled both structure and alignment (sequence and structural) data to be exchanged. ProServer allows both of these data types to be served.

引用

页码：1568 / 1570

页数：3

共 8 条

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