Similar virus spectra and seasonality in paediatric patients with acute respiratory disease, Ghana and Germany

被引:31
作者
Annan, A. [1 ]
Ebach, F. [2 ]
Corman, V. M. [2 ,3 ]
Krumkamp, R. [4 ,5 ]
Adu-Sarkodie, Y. [6 ]
Eis-Huebinger, A. M. [2 ]
Kruppa, T. [1 ,4 ]
Simon, A. [7 ,8 ]
May, J. [4 ,5 ]
Evans, J. [1 ]
Panning, M. [2 ,9 ]
Drosten, C. [2 ,3 ]
Drexler, J. F. [2 ,3 ]
机构
[1] Kumasi Ctr Collaborat Res Trop Med, Kumasi, Ghana
[2] Univ Bonn, Med Ctr, Inst Virol, D-53127 Bonn, Germany
[3] German Ctr Infect Res DZIF, Partner Site Bonn Cologne, Cologne, Germany
[4] BNITM, Hamburg, Germany
[5] German Ctr Infect Res DZIF, Partner Site Hamburg Lubeck Borstel, Lubeck, Germany
[6] Kwame Nkrumah Univ Sci & Technol, Sch Med Sci, Dept Clin Microbiol, Kumasi, Ghana
[7] Univ Bonn, Childrens Hosp, Med Ctr, Paediat Haematol & Oncol, Bonn, Germany
[8] Univ Saarland, Childrens Hosp, Sch Med, Dept Paediat Oncol & Haematol, Homburg, Germany
[9] Univ Freiburg, Med Ctr, Inst Virol, Hugstetter Str 55, D-79106 Freiburg, Germany
关键词
Epidemiology; Germany; Ghana; infant; PCR; respiratory tract infections; viruses; PCR ASSAYS; TRACT INFECTION; VIRAL ETIOLOGY; DIAGNOSIS;
D O I
10.1016/j.cmi.2015.11.002
中图分类号
R51 [传染病];
学科分类号
100201 [内科学];
摘要
Epidemiological differences between tropical and temperate regions regarding viruses causing acute respiratory infection are poorly understood. This is in part because methodological differences limit the comparability of data from these two regions. Using identical molecular detection methods, we tested 1174 Ghanaian and 539 German children with acute respiratory infections sampled over 12 months for the 15 most common respiratory viruses by PCR. A total 43.2% of the Ghanaian and 56.6% of the German children tested positive for at least one respiratory virus. The pneumoviruses respiratory syncytial virus and human metapneumovirus were most frequently detected, in 13.1% and 25.1% within the Ghanaian and German children, respectively. At both study sites, pneumoviruses were more often observed at younger ages (p < 0.001). In the Ghanaian rainy season, enveloped viruses were detected twice as often as non-enveloped viruses (prevalence rate ratio (PR) 2.0, 95% CI 1.7-2.4). In contrast, non-enveloped viruses were more frequent during the Ghanaian dry season (PR 0.6, 95% CI 0.4-0.8). In Germany, enveloped viruses were also more frequently detected during the relatively colder winter season (PR 1.6, 95% CI 1.2-2.1) and non-enveloped viruses during summer (PR 0.7, 95% CI 0.5-0.9). Despite a distance of about 5000 km and a difference of 44 degrees latitude separating Germany and Ghana, virus spectra, age associations and seasonal fluctuation showed similarities between sites. Neither respiratory viruses overall, nor environmentally stable (non-enveloped) viruses in particular were more frequent in tropical Ghana. The standardization of our sampling and laboratory testing revealed similarities in acute respiratory infection virus patterns in tropical and temperate climates. (C) 2015 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.
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收藏
页码:340 / 346
页数:7
相关论文
共 29 条
[1]
Specific Viruses Detected in Nigerian Children in Association with Acute Respiratory Disease [J].
Akinloye, Oluwabukola M. ;
Ronkko, Esa ;
Savolainen-Kopra, Carita ;
Ziegler, Thedi ;
Iwalokun, Bamidele A. ;
Deji-Agboola, Mope A. ;
Oluwadun, Afolabi ;
Roivainen, Merja ;
Adu, Festus D. ;
Hovi, Tapani .
JOURNAL OF TROPICAL MEDICINE, 2011, 2011
[2]
[Anonymous], 2014, HIV AIDS ART REG PHI
[3]
Epidemiology of Viral-associated Acute Lower Respiratory Tract Infection Among Children < 5 Years of Age in a High HIV Prevalence Setting, South Africa, 2009-2012 [J].
Cohen, Cheryl ;
Walaza, Sibongile ;
Moyes, Jocelyn ;
Groome, Michelle ;
Tempia, Stefano ;
Pretorius, Marthi ;
Hellferscee, Orienka ;
Dawood, Halima ;
Chhagan, Meera ;
Naby, Fathima ;
Haffejee, Summaya ;
Variava, Ebrahim ;
Kahn, Kathleen ;
Nzenze, Susan ;
Tshangela, Akhona ;
von Gottberg, Anne ;
Wolter, Nicole ;
Cohen, Adam L. ;
Kgokong, Babatyi ;
Venter, Marietjie ;
Madhi, Shabir A. .
PEDIATRIC INFECTIOUS DISEASE JOURNAL, 2015, 34 (01) :66-72
[4]
Beyond Malaria - Causes of Fever in Outpatient Tanzanian Children [J].
D'Acremont, Valerie ;
Kilowoko, Mary ;
Kyungu, Esther ;
Philipina, Sister ;
Sangu, Willy ;
Kahama-Maro, Judith ;
Lengeler, Christian ;
Cherpillod, Pascal ;
Kaiser, Laurent ;
Genton, Blaise .
NEW ENGLAND JOURNAL OF MEDICINE, 2014, 370 (09) :809-817
[5]
Diagnosis of human metapneumovirus infection in immunosuppressed lung transplant recipients and children evaluated for pertussis [J].
Dare, Ryan ;
Sanghavi, Sonali ;
Bullotta, Arlene ;
Keightley, Maria-Cristina ;
St George, Kirsten ;
Wadowsky, Robert M. ;
Paterson, David L. ;
McCurry, Kenneth R. ;
Reinhart, Todd A. ;
Husain, Shahid ;
Rinaldo, Charles R. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2007, 45 (02) :548-552
[6]
Human coronavirus infections in rural Thailand: A comprehensive study using real-time reverse-transcription polymerase chain reaction assays [J].
Dare, Ryan K. ;
Fry, Alicia M. ;
Chittaganpitch, Malinee ;
Sawanpanyalert, Pathom ;
Olsen, Sonja J. ;
Erdman, Dean D. .
JOURNAL OF INFECTIOUS DISEASES, 2007, 196 (09) :1321-1328
[7]
Influenza-Like Illnesses in Senegal: Not Only Focus on Influenza Viruses [J].
Dia, Ndongo ;
Sarr, Fatoumata Diene ;
Thiam, Diamilatou ;
Sarr, Tening Faye ;
Espie, Emmanuelle ;
OmarBa, Ibrahim ;
Coly, Malang ;
Niang, Mbayame ;
Richard, Vincent .
PLOS ONE, 2014, 9 (03)
[8]
Rapid routine detection of enterovirus RNA in cerebrospinal fluid by a one-step real-time RT-PCR assay [J].
Dierssen, Uta ;
Rehren, Fabienne ;
Henke-Gendo, Comelia ;
Harste, Gabi ;
Heim, Albert .
JOURNAL OF CLINICAL VIROLOGY, 2008, 42 (01) :58-64
[9]
A Novel Diagnostic Target in the Hepatitis C Virus Genome [J].
Drexler, Jan Felix ;
Kupfer, Bernd ;
Petersen, Nadine ;
Tommasini Grotto, Rejane Maria ;
Corvino Rodrigues, Silvia Maria ;
Grywna, Klaus ;
Panning, Marcus ;
Annan, Augustina ;
Silva, Giovanni Faria ;
Douglas, Jill ;
Koay, Evelyn S. C. ;
Smuts, Heidi ;
Netto, Eduardo M. ;
Simmonds, Peter ;
de Moura Campos Pardini, Maria Ines ;
Roth, W. Kurt ;
Drosten, Christian .
PLOS MEDICINE, 2009, 6 (02) :210-220
[10]
Rapid and quantitative detection of human adenovirus DNA by real-time PCR [J].
Heim, A ;
Ebnet, C ;
Harste, G ;
Pring-Åkerblom, P .
JOURNAL OF MEDICAL VIROLOGY, 2003, 70 (02) :228-239