Comparison of QM-only and QM/MM models for the mechanism of tyrosinase

被引:31
作者
Siegbahn, Per E. M. [1 ]
Borowski, Tomasz [2 ]
机构
[1] Stockholm Univ, Arrhenius Lab, Dept Phys, Dept Biochem & Biophys, S-10691 Stockholm, Sweden
[2] Polish Acad Sci, Inst Catalysis & Surface Chem, PL-30239 Krakow, Poland
关键词
CRYSTAL-STRUCTURE; CATALYTIC CYCLE; HEMOCYANIN;
D O I
10.1039/c004378h
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Two previous studies on the mechanism of tyrosinase have given quite conflicting results. In a QM-only study using a rather small model, a mechanism was suggested in which the tyrosine proton is removed before catalysis. This was followed by catalytic cycles where a superoxo ligand attacks the phenolate ring. In another, more recent study, at the QM/MM level including the entire protein in the model, a quite different mechanism was instead advocated where a bridging O2H ligand was homolytically cleaved. That mechanism was rejected in the earlier QM-only study as having a prohibitively large barrier for O-O bond cleavage. In the present study, this discrepancy between the previous studies is investigated by new QM-only and QM/MM calculations.
引用
收藏
页码:109 / 117
页数:9
相关论文
共 22 条
[1]   The effect of heme environment on the hydrogen abstraction reaction of camphor in P450cam catalysis:: A QM/MM study [J].
Altun, A ;
Guallar, V ;
Friesner, RA ;
Shaik, S ;
Thiel, W .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (12) :3924-3925
[2]  
[Anonymous], ENCY INORGANIC CHEM
[3]  
[Anonymous], HDB METALLOPROTEINS
[4]  
[Anonymous], JAG 5 5
[5]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[6]  
Frisch M. J., 2016, Gaussian 03 Revision B.03
[7]   Theoretical study of the catalytic mechanism of catechol oxidase [J].
Guell, Mireia ;
Siegbahn, Per E. M. .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2007, 12 (08) :1251-1264
[8]  
Halcrow MA, 2001, HANDBOOK ON METALLOPROTEINS, P709
[9]   Quantum Chemical Approach to the Mechanism for the Biological Conversion of Tyrosine to Dopaquinone [J].
Inoue, Toshinori ;
Shiota, Yoshihito ;
Yoshizawa, Kazunari .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (50) :16890-16897
[10]   COPPER-DIOXYGEN COMPLEXES - INORGANIC AND BIOINORGANIC PERSPECTIVES [J].
KITAJIMA, N ;
MOROOKA, Y .
CHEMICAL REVIEWS, 1994, 94 (03) :737-757