Determination of internuclear angles of DNA using paramagnetic assisted magnetic alignment

被引:39
作者
Beger, RD [1 ]
Marathias, VM
Volkman, BF
Bolton, PH
机构
[1] Wesleyan Univ, Dept Chem, Middletown, CT 06459 USA
[2] Univ Wisconsin, Dept Biochem, Madison, WI 53706 USA
关键词
magnetic alignment; DNA; paramagnetic; NMR; quadruplex DNA;
D O I
10.1006/jmre.1998.1527
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Paramagnetic ions have been used to assist the magnetic alignment of DNA. The anisotropy of the binding sites is sufficient to give rise to significant alignment of the DNA with the observed proton-carbon dipolar couplings spanning a 70-Hz range. The dipolar couplings have been used to determine the positions of the axial and rhombic alignment axes. The positions of the alignment axes relative to the positions of the binding sites of the paramagnetic europium ions have also been determined. (C) 1998 Academic Press.
引用
收藏
页码:256 / 259
页数:4
相关论文
共 17 条
[11]   THROMBIN-BINDING DNA APTAMER FORMS A UNIMOLECULAR QUADRUPLEX STRUCTURE IN SOLUTION [J].
MACAYA, RF ;
SCHULTZE, P ;
SMITH, FW ;
ROE, JA ;
FEIGON, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (08) :3745-3749
[12]   ORIENTATIONAL BEHAVIOR OF PHOSPHATIDYLCHOLINE BILAYERS IN THE PRESENCE OF AROMATIC AMPHIPHILES AND A MAGNETIC-FIELD [J].
SANDERS, CR ;
SCHAFF, JE ;
PRESTEGARD, JH .
BIOPHYSICAL JOURNAL, 1993, 64 (04) :1069-1080
[13]   Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium [J].
Tjandra, N ;
Bax, A .
SCIENCE, 1997, 278 (5340) :1111-1114
[14]   Use of dipolar H-1-N-15 and H-1-C-13 couplings in the structure determination of magnetically oriented macromolecules in solution [J].
Tjandra, N ;
Omichinski, JG ;
Gronenborn, AM ;
Clore, GM ;
Bax, A .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (09) :732-738
[15]   NUCLEAR MAGNETIC DIPOLE INTERACTIONS IN FIELD-ORIENTED PROTEINS - INFORMATION FOR STRUCTURE DETERMINATION IN SOLUTION [J].
TOLMAN, JR ;
FLANAGAN, JM ;
KENNEDY, MA ;
PRESTEGARD, JH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (20) :9279-9283
[16]   THE TERTIARY STRUCTURE OF A DNA APTAMER WHICH BINDS TO AND INHIBITS THROMBIN DETERMINES ACTIVITY [J].
WANG, KY ;
KRAWCZYK, SH ;
BISCHOFBERGER, N ;
SWAMINATHAN, S ;
BOLTON, PH .
BIOCHEMISTRY, 1993, 32 (42) :11285-11292
[17]   Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin [J].
Wang, KY ;
Kumar, S ;
Pham, TQ ;
Marathias, VM ;
Swaminathan, S ;
Bolton, PH .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (03) :378-394