Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937

被引：85

作者：

Glasner, Jeremy D. ^{[6
]}

Yang, Ching-Hong ^{[1
]}

Reverchon, Sylvie ^{[2
,3
]}

Hugouvieux-Cotte-Pattat, Nicole ^{[2
,3
]}

Condemine, Guy ^{[2
,3
]}

Bohin, Jean-Pierre ^{[4
]}

Van Gijsegem, Frederique ^{[5
]}

Yang, Shihui ^{[1
]}

Franza, Thierry ^{[5
]}

Expert, Dominique ^{[5
]}

Plunkett, Guy, III ^{[6
,8
]}

Francisco, Michael J. San ^{[7
]}

Charkowski, Amy O. ^{[9
]}

Py, Beatrice ^{[10
]}

Bell, Kenneth ^{[11
]}

Rauscher, Lise ^{[5
]}

Rodriguez-Palenzuela, Pablo ^{[12
]}

Toussaint, Ariane ^{[13
]}

Holeva, Maria C. ^{[11
]}

He, Sheng Yang ^{[14
]}

Douet, Vanessa ^{[10
]}

Boccara, Martine ^{[15
]}

Blanco, Carlos ^{[16
]}

Toth, Ian ^{[11
]}

Anderson, Bradley D. ^{[6
]}

Biehl, Bryan S. ^{[6
,12
]}

Mau, Bob ^{[6
]}

Flynn, Sarah M. ^{[11
]}

Barras, Frederic ^{[10
]}

Lindeberg, Magdalen ^{[17
]}

Birch, Paul R. J. ^{[11
]}

Tsuyumu, Shinji ^{[18
]}

Shi, Xiangyang ^{[19
]}

Hibbing, Michael ^{[6
]}

Yap, Mee-Ngan ^{[9
]}

Carpentier, Mathilde ^{[15
]}

Dassa, Elie ^{[20
]}

Umehara, Masahiro ^{[18
]}

Kim, Jihyun F. ^{[21
]}

Rusch, Michael ^{[6
]}

Soni, Pritin ^{[6
]}

Mayhew, George F. ^{[6
]}

Fouts, Derrick E. ^{[22
]}

Gill, Steven R. ^{[22
]}

Blattner, Frederick R. ^{[6
,8
]}

Keen, Noel T. ^{[19
]}

Perna, Nicole T. ^{[6
,8
]}

机构：

[1] Univ Wisconsin, Dept Biol Sci, Milwaukee, WI 53211 USA

[2] INSA, F-69621 Villeurbanne, France

[3] Univ Lyon 1, CNRS, UMR 5240, F-69622 Villeurbanne, France

[4] USTL, CNRS, UMR 8576, F-59655 Villeneuve Dascq, France

[5] UPMC, INA PG, INRA, Lab Interact Plantes Pathogenes,UMR 217, F-75005 Paris, France

[6] Univ Wisconsin, Genome Ctr, Madison, WI 53706 USA

[7] Texas Tech Univ, Dept Biol Sci, Lubbock, TX 79409 USA

[8] Univ Wisconsin, Dept Genet, Madison, WI 53706 USA

[9] Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA

[10] Univ Aix Marseille 2, Lab Chim Bacterienne, CNRS, UPR9043, F-13402 Marseille 20, France

[11] Scottish Crop Res Inst, Dundee DD2 5DA, Scotland

[12] ETS Ingenieros Agronomos, UPM, Dept Biotechnol, E-28040 Madrid, Spain

[13] Univ Libre Bruxelles, SCMBB, Brussels, Belgium

[14] Michigan State Univ, MSU DOE Plant Res Lab, E Lansing, MI 48824 USA

[15] Univ Paris 06, F-75005 Paris, France

[16] Univ Rennes 1, CNRS, UMR 6026, F-35042 Rennes, France

[17] Cornell Univ, Dept Plant Pathol, Ithaca, NY 14853 USA

[18] Shizuoka Univ, Inst Mol Biol & Biotechnol, Shizuoka 4228529, Japan

[19] Univ Calif Riverside, Dept Plant Pathol, Riverside, CA 92521 USA

[20] Inst Pasteur, Dept Microbiol Fondamentale & Med, Unite Membranes Bacteriennes, CNRS,URA 2172, F-75724 Paris 15, France

[21] Korea Res Inst Biosci & Biotechnol, Taejon, South Korea

[22] Inst Genom Res, Rockville, MD 20850 USA

来源：

JOURNAL OF BACTERIOLOGY | 2011年 / 193卷 / 08期

关键词：

CHRYSANTHEMI; RFAM;

D O I：

10.1128/JB.01513-10

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Dickeya dadantii is a plant-pathogenic enterobacterium responsible for the soft rot disease of many plants of economic importance. We present here the sequence of strain 3937, a strain widely used as a model system for research on the molecular biology and pathogenicity of this group of bacteria.

引用

页码：2076 / 2077

页数：2

共 11 条

[1] The RAST server: Rapid annotations using subsystems technology [J].

Aziz, Ramy K. ;

Bartels, Daniela ;

Best, Aaron A. ;

DeJongh, Matthew ;

Disz, Terrence ;

Edwards, Robert A. ;

Formsma, Kevin ;

Gerdes, Svetlana ;

Glass, Elizabeth M. ;

Kubal, Michael ;

Meyer, Folker ;

Olsen, Gary J. ;

Olson, Robert ;

Osterman, Andrei L. ;

Overbeek, Ross A. ;

McNeil, Leslie K. ;

Paarmann, Daniel ;

Paczian, Tobias ;

Parrello, Bruce ;

Pusch, Gordon D. ;

Reich, Claudia ;

Stevens, Rick ;

Vassieva, Olga ;

Vonstein, Veronika ;

Wilke, Andreas ;

Zagnitko, Olga .

BMC GENOMICS, 2008, 9 (1)

[2] Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp atroseptica and characterization of virulence factors [J].

Bell, KS ;

Sebaihia, M ;

Pritchard, L ;

Holden, MTG ;

Hyman, LJ ;

Holeva, MC ;

Thomson, NR ;

Bentley, SD ;

Churcher, LJC ;

Mungall, K ;

Atkin, R ;

Bason, N ;

Brooks, K ;

Chillingworth, T ;

Clark, K ;

Doggett, J ;

Fraser, A ;

Hance, Z ;

Hauser, H ;

Jagels, K ;

Moule, S ;

Norbertczak, H ;

Ormond, D ;

Price, C ;

Quail, MA ;

Sanders, M ;

Walker, D ;

Whitehead, S ;

Salmond, GPC ;

Birch, PRJ ;

Parkhill, J ;

Toth, IK .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (30) :11105-11110

[3] Improved microbial gene identification with GLIMMER [J].

Delcher, AL ;

Harmon, D ;

Kasif, S ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641

[4] ASAP, a systematic annotation package for community analysis of genomes [J].

Glasner, JD ;

Liss, P ;

Plunkett, G ;

Darling, A ;

Prasad, T ;

Rusch, M ;

Byrnes, A ;

Gilson, M ;

Biehl, B ;

Blattner, FR ;

Perna, NT .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :147-151

[5] Rfam: annotating non-coding RNAs in complete genomes [J].

Griffiths-Jones, S ;

Moxon, S ;

Marshall, M ;

Khanna, A ;

Eddy, SR ;

Bateman, A .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D121-D124

[6] Rfam: an RNA family database [J].

Griffiths-Jones, S ;

Bateman, A ;

Marshall, M ;

Khanna, A ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :439-441

[7] Regulation of pectinolysis in Erwinia chrysanthemi [J].

HugouvieuxCottePattat, N ;

Condemine, G ;

Nasser, W ;

Reverchon, S .

ANNUAL REVIEW OF MICROBIOLOGY, 1996, 50 :213-257

[8] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

[9] A whole-genome assembly of Drosophila [J].

Myers, EW ;

Sutton, GG ;

Delcher, AL ;

Dew, IM ;

Fasulo, DP ;

Flanigan, MJ ;

Kravitz, SA ;

Mobarry, CM ;

Reinert, KHJ ;

Remington, KA ;

Anson, EL ;

Bolanos, RA ;

Chou, HH ;

Jordan, CM ;

Halpern, AL ;

Lonardi, S ;

Beasley, EM ;

Brandon, RC ;

Chen, L ;

Dunn, PJ ;

Lai, ZW ;

Liang, Y ;

Nusskern, DR ;

Zhan, M ;

Zhang, Q ;

Zheng, XQ ;

Rubin, GM ;

Adams, MD ;

Venter, JC .

SCIENCE, 2000, 287 (5461) :2196-2204

[10] Potato diseases caused by soft rot erwinias:: an overview of pathogenesis [J].

Pérombelon, MCM .

PLANT PATHOLOGY, 2002, 51 (01) :1-12

← 1 2 →