Complex networks and simple models in biology

被引:89
作者
de Silva, E [1 ]
Stumpf, MPH [1 ]
机构
[1] Univ London Imperial Coll Sci & Technol, Theoret Genom Grp, Div Mol Biosci, London SW7 2AZ, England
关键词
biological networks; network models; network sampling; protein interactions; systems biology;
D O I
10.1098/rsif.2005.0067
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The analysis of molecular networks, such as transcriptional; metabolic and protein interaction networks, has progressed substantially because of the power of models from statistical physics. Increasingly, the data are becoming so detailed-though not always complete or correct-that the simple models are reaching the limits of their usefulness. Here, we will discuss how network information can be described and to some extent quantified. In particular statistics offers a range of tools, such as model selection, which have not yet been widely applied in the analysis of biological networks. We will also outline a number of present challenges posed by biological network data in systems biology, and the extent to which these can be addressed by new developments in statistics, physics and applied mathematics.
引用
收藏
页码:419 / 430
页数:12
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