Variations in yeast 3′-processing cis-elements correlate with transcript stability

被引:18
作者
Graber, JH [1 ]
机构
[1] Jackson Lab, Bar Harbor, ME 04609 USA
关键词
D O I
10.1016/S0168-9525(03)00196-3
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A large set of yeast mRNA 3'-processing regulatory sequences was analyzed statistically, revealing a systematic variation that correlates with measured mRNA stability. Transcripts with relatively short half-lives have a high frequency of inclusion of 3'-processing elements that include the core sequence of binding sites for the PUF proteins, which enhance mRNA turnover. These results suggest that regulatory sequence variation, typically modeled as random, could arise instead from the necessity or advantage of specifying multiple functions in a common sequence element.
引用
收藏
页码:473 / 476
页数:4
相关论文
共 21 条
[1]   SELECTION OF DNA-BINDING SITES BY REGULATORY PROTEINS - STATISTICAL-MECHANICAL THEORY AND APPLICATION TO OPERATORS AND PROMOTERS [J].
BERG, OG ;
VONHIPPEL, PH .
JOURNAL OF MOLECULAR BIOLOGY, 1987, 193 (04) :723-743
[2]   A ubiquitous and conserved signal for RNA localization in chordates [J].
Betley, JN ;
Frith, MC ;
Graber, JH ;
Choo, S ;
Deshler, JO .
CURRENT BIOLOGY, 2002, 12 (20) :1756-1761
[3]   Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor [J].
Dichtl, B ;
Keller, W .
EMBO JOURNAL, 2001, 20 (12) :3197-3209
[4]   Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′-processing sites [J].
Graber, JH ;
McAllister, GD ;
Smith, TF .
NUCLEIC ACIDS RESEARCH, 2002, 30 (08) :1851-1858
[5]   Genomic detection of new yeast pre-mRNA 3′-end-processing signals [J].
Graber, JH ;
Cantor, CR ;
Mohr, SC ;
Smith, TF .
NUCLEIC ACIDS RESEARCH, 1999, 27 (03) :888-894
[6]   3'-end-forming signals of yeast mRNA [J].
Guo, ZJ ;
Sherman, F .
TRENDS IN BIOCHEMICAL SCIENCES, 1996, 21 (12) :477-481
[7]   REDUNDANT 3' END-FORMING SIGNALS FOR THE YEAST CYC1 MESSENGER-RNA [J].
GUO, ZJ ;
RUSSO, P ;
YUN, DF ;
BUTLER, JS ;
SHERMAN, F .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (10) :4211-4214
[8]   Mechanisms of mRNA surveillance in eukaryotes [J].
Hilleren, P ;
Parker, R .
ANNUAL REVIEW OF GENETICS, 1999, 33 :229-260
[9]   A comparison of mammalian and yeast pre-mRNA 3'-end processing [J].
Keller, W ;
MinvielleSebastia, L .
CURRENT OPINION IN CELL BIOLOGY, 1997, 9 (03) :329-336
[10]   Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast [J].
Kessler, MM ;
Henry, MF ;
Shen, E ;
Zhao, J ;
Gross, S ;
Silver, PA ;
Moore, CL .
GENES & DEVELOPMENT, 1997, 11 (19) :2545-2556