Small-angle scattering studies of biological macromolecules in solution

被引:770
作者
Svergun, DI
Koch, MHJ
机构
[1] European Mol Biol Lab, Hamburg Outstn, D-22603 Hamburg, Germany
[2] Russian Acad Sci, Inst Crystallog, Moscow 117333, Russia
关键词
D O I
10.1088/0034-4885/66/10/R05
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Small-angle scattering (SAS) of x-rays and neutrons is a fundamental tool in the study of biological macromolecules. The major advantage of the method lies in its ability to provide structural information about partially or completely disordered systems. SAS allows one to study the structure of native particles in near physiological environments and to analyse structural changes in response to variations in external conditions. In this review we concentrate on SAS studies of isotropic systems, in particular, solutions of biological macromolecules, an area where major progress has been achieved during the last decade. Solution scattering studies are especially important, given the challenge of the 'post-genomic' era with vast numbers of protein sequences becoming available. Numerous structural initiatives aim at large-scale expression and purification of proteins for subsequent structure determination using x-ray crystallography and NMR spectroscopy. Because of the requirement of good crystals for crystallography and the low molecular mass requirement of NMR, a significant fraction of proteins cannot be analysed using these two high-resolution methods. Progress in SAS instrumentation and novel analysis methods, which substantially improve the resolution and reliability of the structural models, makes the method an important complementary tool for these initiatives. The review covers the basics of x-ray and neutron SAS, instrumentation, mathematical methods used in data analysis and major modelling techniques. Examples of applications of SAS to different types of biomolecules (proteins, nucleic acids, macromolecular complexes, polyelectrolytes) are presented. A brief account of the new opportunities offered by third and fourth generation synchrotron radiation sources (time-resolved studies, coherent scattering and single molecule scattering) is also given.
引用
收藏
页码:1735 / 1782
页数:48
相关论文
共 265 条
[31]   Small-angle scattering of interacting particles .1. Basic principles of a global evaluation technique [J].
BrunnerPopela, J ;
Glatter, O .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1997, 30 (04) :431-442
[32]   Interactions in solution of a large oligomeric protein [J].
Budayova, M ;
Bonneté, F ;
Tardieu, A ;
Vachette, P .
JOURNAL OF CRYSTAL GROWTH, 1999, 196 (2-4) :210-219
[33]   The Hofmeister series: salt and solvent effects on interfacial phenomena [J].
Cacace, MG ;
Landau, EM ;
Ramsden, JJ .
QUARTERLY REVIEWS OF BIOPHYSICS, 1997, 30 (03) :241-277
[34]   Analysis of rapid, large-scale protein quaternary structural changes:: Time-resolved X-ray solution scattering of Nudaurelia capensis ω virus (NωV) maturation [J].
Canady, MA ;
Tsuruta, H ;
Johnson, JE .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (04) :803-814
[35]   A COMPLETE MAPPING OF THE PROTEINS IN THE SMALL RIBOSOMAL-SUBUNIT OF ESCHERICHIA-COLI [J].
CAPEL, MS ;
ENGELMAN, DM ;
FREEBORN, BR ;
KJELDGAARD, M ;
LANGER, JA ;
RAMAKRISHNAN, V ;
SCHINDLER, DG ;
SCHNEIDER, DK ;
SCHOENBORN, BP ;
SILLERS, IY ;
YABUKI, S ;
MOORE, PB .
SCIENCE, 1987, 238 (4832) :1403-1406
[36]  
Casselyn M, 2002, ACTA CRYSTALLOGR D, V58, P1568, DOI [10.1107/S0907444902014300, 10.1107/S0907444902014403]
[37]   Spherical plant viruses: interactions in solution, phase diagrams and crystallization of brome mosaic virus [J].
Casselyn, M ;
Perez, J ;
Tardieu, A ;
Vachette, P ;
Witz, J ;
Delacroix, H .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 :1799-1812
[38]   Reconstruction of protein form with X-ray solution scattering and a genetic algorithm [J].
Chacón, P ;
Díaz, JF ;
Morán, F ;
Andreu, JM .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 299 (05) :1289-1302
[39]   Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm [J].
Chacón, P ;
Morán, F ;
Díaz, JF ;
Pantos, E ;
Andreu, JM .
BIOPHYSICAL JOURNAL, 1998, 74 (06) :2760-2775
[40]   Hydration in proteins observed by high-resolution neutron crystallography [J].
Chatake, T ;
Ostermann, A ;
Kurihara, K ;
Parak, FG ;
Niimura, N .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2003, 50 (03) :516-523