Likelihood-enhanced fast rotation functions

被引:1116
作者
Storoni, LC [1 ]
McCoy, AJ [1 ]
Read, RJ [1 ]
机构
[1] Univ Cambridge, Cambridge Inst Med Res, Dept Haematol, Cambridge CB2 2XY, England
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2004年 / 60卷
关键词
D O I
10.1107/S0907444903028956
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Experiences with the molecular-replacement program Beast have shown that maximum-likelihood rotation targets are more sensitive to the correct orientation than traditional targets. However, this comes at a high computational cost: brute-force rotation searches can take hours or even days of computation time on current desktop computers. Series approximations to the full likelihood target have been developed that can be computed by fast Fourier transforms in minutes. These likelihood-enhanced targets are more sensitive to the correct orientation than the Crowther fast rotation function and they take advantage of information from partial solutions. The likelihood-enhanced rotation targets have been implemented in the program Phaser.
引用
收藏
页码:432 / 438
页数:7
相关论文
共 22 条
  • [1] [Anonymous], [No title captured]
  • [2] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [3] Bayesian statistical viewpoint on structure determination: Basic concepts and examples
    Bricogne, G
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 : 361 - 423
  • [4] BRICOGNE G, 1992, P CCP4 STUD WEEK MOL, P62
  • [5] CROWTHER RA, 1972, MOL REPLACEMENT METH, P173
  • [6] COMPLEX BETWEEN THE SUBTILISIN FROM A MESOPHILIC BACTERIUM AND THE LEECH INHIBITOR EGLIN-C
    DAUTER, Z
    BETZEL, C
    GENOV, N
    PIPON, N
    WILSON, KS
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1991, 47 : 707 - &
  • [7] Fast rotational matching
    Kovacs, JA
    Wriggers, W
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 : 1282 - 1286
  • [8] Implementation of molecular replacement in AMoRe
    Navaza, J
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 : 1367 - 1372
  • [9] AMORE - AN AUTOMATED PACKAGE FOR MOLECULAR REPLACEMENT
    NAVAZA, J
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1994, 50 : 157 - 163
  • [10] A GENERALIZED PATTERSON-SEARCH METHOD
    NORDMAN, CE
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1994, 50 : 68 - 72