CryptoDB:: the Cryptosporidium genome resource

被引：68

作者：

Puiu, D

Enomoto, S

Buck, GA

Abrahamsen, MS

Kissinger, JC ^{[1
]}

机构：

[1] Univ Georgia, Ctr Trop & Emerging Global Dis, Athens, GA 30602 USA

[2] Virginia Commonwealth Univ, Ctr Study Biol Complex, Richmond, VA USA

[3] Univ Minnesota, Dept Vet Pathobiol, St Paul, MN 55108 USA

[4] Univ Georgia, Dept Genet, Athens, GA 30602 USA

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

关键词：

D O I：

10.1093/nar/gkh050

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

CryptoDB (http://CryptoDB.org) represents a collaborative effort to locate all genome data for the apicomplexan parasite Cryptosporidium parvum in a single user-friendly database. CryptoDB currently houses the genomic sequence data for both the human type 1 H strain and the bovine type 2 IOWA strain in addition to all other available EST and GSS sequences obtained from public repositories. All data are available for data mining via BLAST, keyword searches of pre-computed BLASTX results and user-defined or PROSITE motif pattern searches. Release 1.0 of CryptoDB contains similar to19 million bases of genome sequence for the H and IOWA strains and an additional similar to24 million bases of GSS and EST sequence obtained from other sources. Open reading frames greater than 50 and 100 amino acids have been generated for all sequences and all data are available for bulk down-load. This database, like other apicomplexan parasite databases, has been built utilizing the PlasmoDB model.

引用

页码：D329 / D331

页数：3

共 17 条

[1]

[Anonymous], 1997, CRYPTOSPORIDIUM CRYP

[2] PlasmoDB:: the Plasmodium genome resource.: A database integrating experimental and computational data [J].