Characterisation of kinase-selective inhibitors by chemical proteomics

被引:35
作者
Daub, H [1 ]
机构
[1] Max Planck Inst Biochem, Dept Biol Mol, D-82152 Martinsried, Germany
来源
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS | 2005年 / 1754卷 / 1-2期
关键词
protein kinase; chemical proteomic; affinity purification; mass spectrometry; inhibitor selectivity; target identification;
D O I
10.1016/j.bbapap.2005.07.028
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Low-molecular-weight inhibitors of protein kinases are extensively used as research tools in signal transduction analysis and constitute a rapidly growing class of therapeutics for targeted intervention in human diseases. To determine how kinase-selective drugs interfere with cellular physiology on the molecular level, experimental strategies relying on the affinity capture of cellular targets in combination with protein identification by mass spectrometry have been established for a variety of kinase inhibitors. Importantly, these chemical proteomic methods permit the direct analysis of kinase inhibitor selectivity in biological systems and have led to new insights into the cellular modes of action of kinase-selective small molecule antagonists. (c) 2005 Elsevier B.V All rights reserved.
引用
收藏
页码:183 / 190
页数:8
相关论文
共 48 条
[1]   Mass spectrometry-based proteomics [J].
Aebersold, R ;
Mann, M .
NATURE, 2003, 422 (6928) :198-207
[2]   Mitotic mechanics: the auroras come into view [J].
Andrews, PD ;
Knatko, E ;
Moore, WJ ;
Swedlow, JR .
CURRENT OPINION IN CELL BIOLOGY, 2003, 15 (06) :672-683
[3]   Roscovitine targets, protein kinases and pyridoxal kinase [J].
Bach, S ;
Knockaert, M ;
Reinhardt, J ;
Lozach, O ;
Schmitt, S ;
Baratte, B ;
Koken, M ;
Coburn, SP ;
Tang, L ;
Jiang, T ;
Liang, DC ;
Galons, H ;
Dierick, JF ;
Pinna, LA ;
Meggio, F ;
Totzke, F ;
Schächtele, C ;
Lerman, AS ;
Carnero, A ;
Wan, YQ ;
Gray, N ;
Meijer, L .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (35) :31208-31219
[4]   The specificities of protein kinase inhibitors: an update [J].
Bain, J ;
McLauchlan, H ;
Elliott, M ;
Cohen, P .
BIOCHEMICAL JOURNAL, 2003, 371 :199-204
[5]   A three-hybrid approach to scanning the proteome for targets of small molecule kinase inhibitors [J].
Becker, F ;
Murthi, K ;
Smith, C ;
Come, J ;
Costa-Roldán, N ;
Kaufmann, C ;
Hanke, U ;
Degenhart, C ;
Baumann, S ;
Wallner, W ;
Huber, A ;
Dedier, S ;
Dill, S ;
Kinsman, D ;
Hediger, M ;
Bockovich, N ;
Meier-Ewert, S ;
Kluge, AF ;
Kley', N .
CHEMISTRY & BIOLOGY, 2004, 11 (02) :211-223
[6]   A large-scale RNAi screen in human cells identifies new components of the p53 pathway [J].
Berns, K ;
Hijmans, EM ;
Mullenders, J ;
Brummelkamp, TR ;
Velds, A ;
Heimerikx, M ;
Kerkhoven, RM ;
Madiredjo, M ;
Nijkamp, W ;
Weigelt, B ;
Agami, R ;
Ge, W ;
Cavet, G ;
Linsley, PS ;
Beijersbergen, RL ;
Bernards, R .
NATURE, 2004, 428 (6981) :431-437
[7]   Characterization of a conserved structural determinant controlling protein kinase sensitivity to selective inhibitors [J].
Blencke, S ;
Zech, B ;
Engkvist, O ;
Greff, Z ;
Örfi, L ;
Horváth, Z ;
Kéri, G ;
Ullrich, A ;
Daub, H .
CHEMISTRY & BIOLOGY, 2004, 11 (05) :691-701
[8]   Proteome-wide identification of cellular targets affected by bisindolylmaleimide-type protein kinase C inhibitors [J].
Brehmer, D ;
Godl, K ;
Zech, B ;
Wissing, J ;
Daub, H .
MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (05) :490-500
[9]  
Brehmer D, 2005, CANCER RES, V65, P379
[10]   Inhibitors of de novo nucleotide biosynthesis as drugs [J].
Christopherson, RI ;
Lyons, SD ;
Wilson, PK .
ACCOUNTS OF CHEMICAL RESEARCH, 2002, 35 (11) :961-971