Introducing ONETEP: Linear-scaling density functional simulations on parallel computers

被引:437
作者
Skylaris, CK [1 ]
Haynes, PD [1 ]
Mostofi, AA [1 ]
Payne, MC [1 ]
机构
[1] Cavendish Lab, Cambridge CB3 0HE, England
关键词
D O I
10.1063/1.1839852
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present ONETEP (order-N electronic total energy package), a density functional program for parallel computers whose computational cost scales linearly with the number of atoms and the number of processors. ONETEP is based on our reformulation of the plane wave pseudopotential method which exploits the electronic localization that is inherent in systems with a nonvanishing band gap. We summarize the theoretical developments that enable the direct optimization of strictly localized quantities expressed in terms of a delocalized plane wave basis. These same localized quantities lead us to a physical way of dividing the computational effort among many processors to allow calculations to be performed efficiently on parallel supercomputers. We show with examples that ONETEP achieves excellent speedups with increasing numbers of processors and confirm that the time taken by ONETEP as a function of increasing number of atoms for a given number of processors is indeed linear. What distinguishes our approach is that the localization is achieved in a controlled and mathematically consistent manner so that ONETEP obtains the same accuracy as conventional cubic-scaling plane wave approaches and offers fast and stable convergence. We expect that calculations with ONETEP have the potential to provide quantitative theoretical predictions for problems involving thousands of atoms such as those often encountered in nanoscience and biophysics. (C) 2005 American Institute of Physics.
引用
收藏
页数:10
相关论文
共 65 条
  • [1] Systematic generation of finite-range atomic basis sets for linear-scaling calculations
    Anglada, E
    Soler, JM
    Junquera, J
    Artacho, E
    [J]. PHYSICAL REVIEW B, 2002, 66 (20): : 1 - 4
  • [2] Structural relaxations in electronically excited poly(para-phenylene) -: art. no. 116401
    Artacho, E
    Rohlfing, M
    Côté, M
    Haynes, PD
    Needs, RJ
    Molteni, C
    [J]. PHYSICAL REVIEW LETTERS, 2004, 93 (11) : 116401 - 1
  • [3] NONORTHOGONAL BASIS-SETS IN QUANTUM-MECHANICS - REPRESENTATIONS AND 2ND QUANTIZATION
    ARTACHO, E
    DELBOSCH, LM
    [J]. PHYSICAL REVIEW A, 1991, 43 (11): : 5770 - 5777
  • [4] Sparsity of the density matrix in Kohn-Sham density functional theory and an assessment of linear system-size scaling methods
    Baer, R
    HeadGordon, M
    [J]. PHYSICAL REVIEW LETTERS, 1997, 79 (20) : 3962 - 3965
  • [5] Phonons and related crystal properties from density-functional perturbation theory
    Baroni, S
    de Gironcoli, S
    Dal Corso, A
    Giannozzi, P
    [J]. REVIEWS OF MODERN PHYSICS, 2001, 73 (02) : 515 - 562
  • [6] BLOUNT EI, 1962, SOLID STATE PHYS, V13, P305
  • [7] GROUND-STATE OF THE ELECTRON-GAS BY A STOCHASTIC METHOD
    CEPERLEY, DM
    ALDER, BJ
    [J]. PHYSICAL REVIEW LETTERS, 1980, 45 (07) : 566 - 569
  • [8] A general parallel sparse-blocked matrix multiply for linear scaling SCF theory
    Challacombe, M
    [J]. COMPUTER PHYSICS COMMUNICATIONS, 2000, 128 (1-2) : 93 - 107
  • [9] Hot-atom O2 dissociation and oxide nucleation on Al(111) -: art. no. 176104
    Ciacchi, LC
    Payne, MC
    [J]. PHYSICAL REVIEW LETTERS, 2004, 92 (17) : 176104 - 1
  • [10] Learn on the fly:: A hybrid classical and quantum-mechanical molecular dynamics simulation -: art. no. 175503
    Csányi, G
    Albaret, T
    Payne, MC
    De Vita, A
    [J]. PHYSICAL REVIEW LETTERS, 2004, 93 (17) : 175503 - 1