iHOP web services

被引:74
作者
Fernandez, Jose M. [1 ]
Hoffmann, Robert [1 ]
Valencia, Alfonso [1 ]
机构
[1] MIT, Comp Sci & Artificial Intelligence Lab, Decentralized Informat Grp, Cambridge, MA 02139 USA
关键词
D O I
10.1093/nar/gkm298
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
iHOP provides fast, accurate, comprehensive, and up-to-date summary information on more than 80 000 biological molecules by automatically extracting key sentences from millions of PubMed documents. Its intuitive user interface and navigation scheme have made iHOP extremely successful among biologists, counting more than 500 000 visits per month ( iHOP access statistics: http://www.ihop-net.org/UniPub/iHOP/info/logs/). Here we describe a public programmatic API that enables the integration of main iHOP functionalities in bioinformatic programs and workflows.
引用
收藏
页码:W21 / W26
页数:6
相关论文
共 20 条
  • [11] Text-mining and information-retrieval services for molecular biology
    Krallinger, M
    Valencia, A
    [J]. GENOME BIOLOGY, 2005, 6 (07)
  • [12] Text mining approaches in molecular biology and biomedicine
    Krallinger, M
    Erhardt, RAA
    Valencia, A
    [J]. DRUG DISCOVERY TODAY, 2005, 10 (06) : 439 - 445
  • [13] KREGER H, 2001, WEB SERVICE CONCEPTU
  • [14] Labarga A., 2005, EMBNET NEWS, V11, P18
  • [15] Taverna: a tool for the composition and enactment of bioinformatics workflows
    Oinn, T
    Addis, M
    Ferris, J
    Marvin, D
    Senger, M
    Greenwood, M
    Carver, T
    Glover, K
    Pocock, MR
    Wipat, A
    Li, P
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3045 - 3054
  • [16] Distribution of information in biomedical abstracts and full-text publications
    Schuemie, MJ
    Weeber, M
    Schijvenaars, BJA
    van Mulligen, EM
    van der Eijk, CC
    Jelier, R
    Mons, B
    Kors, JA
    [J]. BIOINFORMATICS, 2004, 20 (16) : 2597 - 2604
  • [17] The success (or not) of HUGO nomenclature
    Tamames, Javier
    Valencia, Alfonso
    [J]. GENOME BIOLOGY, 2006, 7 (05)
  • [18] Database resources of the National Center for Biotechnology Information
    Wheeler, David L.
    Barrett, Tanya
    Benson, Dennis A.
    Bryant, Stephen H.
    Canese, Kathi
    Chetvernin, Vyacheslav
    Church, Deanna M.
    DiCuccio, Michael
    Edgar, Ron
    Federhen, Scott
    Geer, Lewis Y.
    Kapustin, Yuri
    Khovayko, Oleg
    Landsman, David
    Lipman, David J.
    Madden, Thomas L.
    Maglott, Donna R.
    Ostell, James
    Miller, Vadim
    Pruitt, Kim D.
    Schuler, Gregory D.
    Sequeira, Edwin
    Sherry, Steven T.
    Sirotkin, Karl
    Souvorov, Alexandre
    Starchenko, Grigory
    Tatusov, Roman L.
    Tatusova, Tatiana A.
    Wagner, Lukas
    Yaschenko, Eugene
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 : D5 - D12
  • [19] BioMOBY successfully integrates distributed heterogeneous bioinformatics Web services. The PlaNet exemplar case
    Wilkinson, M
    Schoof, H
    Ernst, R
    Haase, D
    [J]. PLANT PHYSIOLOGY, 2005, 138 (01) : 4 - 16
  • [20] Wilkinson Mark D, 2002, Brief Bioinform, V3, P331, DOI 10.1093/bib/3.4.331