Identification of promoter sequences using archaeal genomic sequences -: 2.: Analysis of a meso-thermophile, Thermoplasma volcanium

被引：7

作者：

Amano, N ^{[1
]}

Tsuji, K ^{[1
]}

Ebihara, S ^{[1
]}

Suzuki, M ^{[1
]}

机构：

[1] AIST, Tsukuba, Ibaraki 3058566, Japan

来源：

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES | 2003年 / 79卷 / 06期

关键词：

FFRP; genome analysis; Shine-Dalgarno sequence; TATA box; thermophile; transcription; translation;

D O I：

10.2183/pjab.79B.163

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Following the direction of our previous publication (Amano, N., Tsuji, K., and Suzuki, M. (2003) Proc. Japan Acad. 7913, 131-136), promoter and gene-coding regions, and types of transcription units (i.e. operons and independently regulated genes) were theoretically identified for Thermoplasma volcanium. Possibly reflecting the optimum growth temperature lower than that of Pyrococcus sp. OT3, signals for transcription and translation were found to be weaker, and the degree of differentiating gene-coding regions was lesser. Nevertheless, with some modification of the strategy, genes were identified with a similarly high precision. Some notable characteristics of the identified promoter sequences are discussed.

引用

页码：163 / 169

页数：7

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