Visual representation of the complete genomic DNA sequence of the thermophilic archaeon Thermoplasma volcanium

被引：2

作者：

Minezaki, Y

Kawashima, T

Amano, N

Ebihara, S

Suzuki, Y

Suzuki, K

Koike, H

Suzuki, M

机构：

[1] Natl Inst Adv Ind Sci & Technol, AIST, AIST Tsukuba Ctr 6 10, Tsukuba, Ibaraki 3058566, Japan

[2] Univ Tsukuba, Doctoral Program Med Sci, Tsukuba, Ibaraki 3050006, Japan

来源：

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES | 2003年 / 79卷 / 01期

关键词：

acidophile; archaea; extremophile; genome analysis; genome comparison;

D O I：

10.2183/pjab.79B.15

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The complete genomic DNA sequence of the thermophilic archaeon Thermoplasma volcanium is visually represented by assembling micro-squares in four color-types. The number of bases in this sequence (1,584,804) is larger than what was reported earlier (1,584,799 in Kawashima, T., Yamamoto, Y, Aramaki, H., Nunoshiba, T., Kawamoto, T. et al., 1999, Proc. Japan Acad. 7511, 213-218) by 5. These five bases (A at position 320,375, G at 342,507, T at 1,182,809, A at 1,365,060, and C at 1,376,292 in the new version) are missing from the previous version, mainly, not because of erroneous sequence reading, but due to physical deletion of corresponding base-pairs upon replication of the cloned DNA fragments in E. coli cells.

引用

页码：15 / 21

页数：7

共 13 条

[1] Informatic identification of blocks of ordered nucleotide sequences in human chromosome 22 [J].

Amano, N ;

Minezaki, Y ;

Suzuki, M .

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, 2002, 78 (07) :205-210

[2] Localization of A:T and G:C basepairs in genomes of higher eukaryotes [J].

Amano, N ;

Suzuki, M .

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, 2002, 78 (05) :117-122

[3] Formation of thymine clusters in genomes of higher eukaryotes [J].

Amano, N ;

Suzuki, M .

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, 2002, 78 (06) :161-166

[4]

AMANO N, 2000, BRAIN SCI, V22, P879

[5] Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium [J].

Kawashima, T ;

Amano, N ;

Koike, H ;

Makino, S ;

Higuchi, S ;

Kawashima-Ohya, Y ;

Watanabe, K ;

Yamazaki, M ;

Kanehori, K ;

Kawamoto, T ;

Nunoshiba, T ;

Yamamoto, Y ;

Aramaki, H ;

Makino, K ;

Suzuki, M .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (26) :14257-14262

[6] Nucleotide sequences of the plastid and nuclear chromosome I of the unicellular red alga Cyanidioschyzon merolae [J].

Kawashima, T ;

Amano, N ;

Higuchi, S ;

Minezaki, Y ;

Clowney, L ;

Ishijima, SA ;

Koike, H ;

Aramaki, H ;

Nunoshiba, T ;

Kawamoto, T ;

Yokoyama, K ;

Kimura, S ;

Makino, K ;

Suzuki, M .

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, 2002, 78 (10) :299-304

[7] Determination of the complete genomic DNA sequence of Thermoplasma volcanium GSS1 [J].

Kawashima, T ;

Yamamoto, Y ;

Aramaki, H ;

Nunoshiba, T ;

Kawamoto, T ;

Watanabe, K ;

Yamazaki, M ;

Kanehori, K ;

Amano, N ;

Ohya, Y ;

Makino, K ;

Suzuki, M .

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, 1999, 75 (07) :213-218

[8]

KAYUKAWA J, 2001, NIKKEI TRIGGER, V9, P62

[9] Visual presentation of complete genomic DNA sequences, and its application to identification of gene-coding regions [J].

Makino, S ;

Amano, N ;

Suzuki, M .

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, 1999, 75 (10) :311-316

[10] The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum [J].

Ruepp, A ;

Graml, W ;

Santos-Martinez, ML ;

Koretle, KK ;

Volker, C ;

Mewes, HW ;

Frishman, D ;

Stocker, S ;

Lupas, AN ;

Baumeister, W .

NATURE, 2000, 407 (6803) :508-513

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