Matrix methods for solving protein substructures of chlorine and sulfur from anomalous data

被引:49
作者
de Graaff, RAG [1 ]
Hilge, M [1 ]
van der Plas, JL [1 ]
Abrahams, JP [1 ]
机构
[1] Leiden Univ, Leiden Inst Chem, Gorlaeus Labs, NL-2300 RA Leiden, Netherlands
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 2001年 / 57卷
关键词
D O I
10.1107/S0907444901016535
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The weak signal obtained from the anomalous scattering (at lambda = 1.54 Angstrom) of naturally occurring elements such as sulfur, phosphorus and ordered solvent chloride ions is used to determine the atomic positions of these atoms. Two examples are discussed: the sulfur and chlorine substructure of tetragonal hen egg-white lysozyme and an oligonucleotide containing ten P atoms. The substructure of lysozyme was also solved from Cu K alpha radiation data collected on a standard rotating-anode generator. The results presented here are an illustration of the power of the matrix methods, which are to be implemented in next distribution of the direct methods package CRUNCH.
引用
收藏
页码:1857 / 1862
页数:6
相关论文
共 22 条
[1]   New developments in phase refinement [J].
Abrahams, JP ;
De Graaff, RAG .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1998, 8 (05) :601-605
[2]   Difference structure-factor normalization for heavy-atom or anomalous-scattering substructure determinations [J].
Blessing, RH ;
Smith, GD .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1999, 32 :664-670
[3]   Density modification for macromolecular phase improvement [J].
Cowtan, KD ;
Zhang, KYJ .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1999, 72 (03) :245-270
[4]   Can anomalous signal of sulfur become a tool for solving protein crystal structures? [J].
Dauter, Z ;
Dauter, M ;
de La Fortelle, E ;
Bricogne, G ;
Sheldrick, GM .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (01) :83-92
[5]   Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy [J].
Dauter, Z ;
Adamiak, DA .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 :990-995
[6]   ON THE APPLICATION OF PHASE-RELATIONSHIPS TO COMPLEX STRUCTURES .22. TECHNIQUES FOR RANDOM PHASE REFINEMENT [J].
DEBAERDEMAEKER, T ;
WOOLFSON, MM .
ACTA CRYSTALLOGRAPHICA SECTION A, 1983, 39 (MAR) :193-196
[7]   AUTOMATIC-DETERMINATION OF CRYSTAL-STRUCTURES USING KARLE-HAUPTMAN MATRICES [J].
DEGELDER, R ;
DEGRAAFF, RAG ;
SCHENK, H .
ACTA CRYSTALLOGRAPHICA SECTION A, 1993, 49 :287-293
[8]  
HAUPTMAN H, 2000, COMMUNICATION
[9]   STRUCTURE OF THE HYDROPHOBIC PROTEIN CRAMBIN DETERMINED DIRECTLY FROM THE ANOMALOUS SCATTERING OF SULFUR [J].
HENDRICKSON, WA ;
TEETER, MM .
NATURE, 1981, 290 (5802) :107-113
[10]   ON THE AUTOMATIC EXTENSION OF INCOMPLETE MODELS BY ITERATIVE FOURIER CALCULATION [J].
KINNEGING, AJ ;
DEGRAAFF, RAG .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1984, 17 (OCT) :364-366