Formation of helical states in wormlike polymer chains

被引:65
作者
Kemp, JP [1 ]
Chen, ZY [1 ]
机构
[1] Univ Waterloo, Guelph Waterloo Program Grad Work Phys, Dept Phys, Waterloo, ON N2L 3G1, Canada
关键词
D O I
10.1103/PhysRevLett.81.3880
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We propose a potential for wormlike polymer chains which could be used to model the low-temperature polypeptide structures. We successfully reproduced helix ground states up to 6.5 helical loops, using the multicanonical Monte Carlo simulation method. We demonstrate that the coil-helix transition involves four distinct states: coil (gaslike), collapsed globular (liquidlike), and two helical states I and II (both solidlike). The helix I state is characterized by a helical ordering with dangling loose ends, and the helix II state corresponds to a near-perfect helical ordering in the entirely crystallized chain. [S0031-9007(98)07574-7].
引用
收藏
页码:3880 / 3883
页数:4
相关论文
共 19 条
[1]   COMPARATIVE-STUDY OF MULTICANONICAL AND SIMULATED ANNEALING ALGORITHMS IN THE PROTEIN-FOLDING PROBLEM [J].
HANSMANN, UHE ;
OKAMOTO, Y .
PHYSICA A, 1994, 212 (3-4) :415-437
[2]   PREDICTION OF ALPHA-HELIX FOLDING OF ISOLATED C-PEPTIDE OF RIBONUCLEASE A BY MONTE-CARLO SIMULATED ANNEALING [J].
KAWAI, H ;
OKAMOTO, Y ;
FUKUGITA, M ;
NAKAZAWA, T ;
KIKUCHI, T .
CHEMISTRY LETTERS, 1991, (02) :213-216
[3]   THEORY OF HELIX-COIL TRANSITION IN POLYPEPTIDES [J].
LIFSON, S .
JOURNAL OF CHEMICAL PHYSICS, 1961, 34 (06) :1963-&
[4]   Statistical mechanics of double-stranded semiflexible polymers [J].
Liverpool, TB ;
Golestanian, R ;
Kremer, K .
PHYSICAL REVIEW LETTERS, 1998, 80 (02) :405-408
[5]   OPTICAL-ACTIVITY OF POLYPEPTIDES AND PROTEINS [J].
MADISON, V ;
SCHELLMAN, J .
BIOPOLYMERS, 1972, 11 (05) :1041-+
[6]   THE PIVOT ALGORITHM - A HIGHLY EFFICIENT MONTE-CARLO METHOD FOR THE SELF-AVOIDING WALK [J].
MADRAS, N ;
SOKAL, AD .
JOURNAL OF STATISTICAL PHYSICS, 1988, 50 (1-2) :109-186
[7]   Localized structures of polymers with long-range interactions [J].
Muthukumar, M .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (02) :691-700
[8]  
NAGAI K, 1961, J PHYS SOC JPN, V15, P407
[9]   HELIX-FORMING TENDENCIES OF NONPOLAR AMINO-ACIDS PREDICTED BY MONTE-CARLO SIMULATED ANNEALING [J].
OKAMOTO, Y .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1994, 19 (01) :14-23
[10]   THERMODYNAMICS OF HELIX-COIL TRANSITIONS STUDIED BY MULTICANONICAL ALGORITHMS [J].
OKAMOTO, Y ;
HANSMANN, UHE .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (28) :11276-11287