A decade of advances in metabonomics

被引:35
作者
Barton, Richard H. [1 ,2 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Fac Med, Dept Surg & Canc, London SW7 2AZ, England
[2] Univ London Imperial Coll Sci Technol & Med, CISBIC, London SW7 2AZ, England
基金
奥地利科学基金会;
关键词
chemometrics; metabonomics; microbiome; multivariate; normalisation; personalised medicine; PLS; toxicology; TOTAL CORRELATION SPECTROSCOPY; METABOLIC-RESPONSES; H-1-NMR SPECTRA; WEB SERVER; NMR; IDENTIFICATION; CLASSIFICATION; PHENOTYPE; BIOFLUIDS; TOXICITY;
D O I
10.1517/17425255.2011.547473
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
The metabonomic approach to biological analysis has demonstrated considerable success in obtaining and decoding metabolic signatures of health, disease and biological challenge. The rise of metabonomics to join the principal 'omics' streams in medical research has been enhanced in particular over the last 10 years by developments in modelling methods, rather than simply via advances in the supporting analytical platforms and biosampling modalities. Metabonomic analysis has been applied in a diverse range of areas from toxicology and dietary effects through to parasitology and molecular epidemiology, and promises yet further advances and wider future application. Some of the basis and methodology of this success is discussed, and some analytical sampling options, future modelling techniques and new targets, and 'blue skies' possibilities are presented in the context of personalised health and the delivery of optimised medical care to individuals. Metabonomics will continue to contribute significantly to improving our knowledge of a wide range of biological systems.
引用
收藏
页码:129 / 136
页数:8
相关论文
共 52 条
[1]
[Anonymous], The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database
[2]
Batch statistical processing of 1H NMR-derived urinary spectral data [J].
Antti, H ;
Bollard, ME ;
Ebbels, T ;
Keun, H ;
Lindon, JC ;
Nicholson, JK ;
Holmes, E .
JOURNAL OF CHEMOMETRICS, 2002, 16 (8-10) :461-468
[3]
The influence of EDTA and citrate anticoagulant addition to human plasma on information recovery from NMR-based metabolic profiling studies [J].
Barton, Richard H. ;
Waterman, Daniel ;
Bonner, Frank W. ;
Holmes, Elaine ;
Clarke, Robert ;
Nicholson, Jeremy K. ;
Lindon, John C. .
MOLECULAR BIOSYSTEMS, 2010, 6 (01) :215-224
[4]
Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts [J].
Beckonert, Olaf ;
Keun, Hector C. ;
Ebbels, Timothy M. D. ;
Bundy, Jacob G. ;
Holmes, Elaine ;
Lindon, John C. ;
Nicholson, Jeremy K. .
NATURE PROTOCOLS, 2007, 2 (11) :2692-2703
[5]
Application of orthogonal signal correction to minimise the effects of physical and biological variation in high resolution 1H NMR spectra of biofluids [J].
Beckwith-Hall, BM ;
Brindle, JT ;
Barton, RH ;
Coen, M ;
Holmes, E ;
Nicholson, JK ;
Antti, H .
ANALYST, 2002, 127 (10) :1283-1288
[6]
Two-Dimensional Statistical Recoup ling for the Identification of Perturbed Metabolic Networks from NMR Spectroscopy [J].
Blaise, Benjamin J. ;
Navratil, Vincent ;
Domange, Celine ;
Shintu, Laetitia ;
Dumas, Marc-Emmanuel ;
Elena-Herrmann, Benedicte ;
Emsley, Lyndon ;
Toulhoat, Pierre .
JOURNAL OF PROTEOME RESEARCH, 2010, 9 (09) :4513-4520
[7]
Brown SD, 2009, COMPREHENSIVE CHEMOMETRICS: CHEMICAL AND BIOCHEMICAL DATA ANALYSIS, VOLS 1-4, P1
[8]
Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism [J].
Clayton, T. Andrew ;
Baker, David ;
Lindon, John C. ;
Everett, Jeremy R. ;
Nicholson, Jeremy K. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (34) :14728-14733
[9]
Statistical total correlation spectroscopy:: An exploratory approach for latent biomarker identification from metabolic 1H NMR data sets [J].
Cloarec, O ;
Dumas, ME ;
Craig, A ;
Barton, RH ;
Trygg, J ;
Hudson, J ;
Blancher, C ;
Gauguier, D ;
Lindon, JC ;
Holmes, E ;
Nicholson, J .
ANALYTICAL CHEMISTRY, 2005, 77 (05) :1282-1289
[10]
Statistical heterospectroscopy, an approach to the integrated analysis of NMR and UPLC-MS data sets: Application in metabonomic toxicology studies [J].
Crockford, DJ ;
Holmes, E ;
Lindon, JC ;
Plumb, RS ;
Zirah, S ;
Bruce, SJ ;
Rainville, P ;
Stumpf, CL ;
Nicholson, JK .
ANALYTICAL CHEMISTRY, 2006, 78 (02) :363-371