Structure of the nuclease domain of ribonuclease III from M-tuberculosis at 2.1 Å

被引:26
作者
Akey, DL [1 ]
Berger, JM [1 ]
机构
[1] Univ Calif Berkeley, Dept Mol & Cellular Biol, Berkeley, CA 94720 USA
关键词
RNaseIII; dsRNA; RNA processing; RNA interference; enzymes; protein-nucleic acid interactions; crystallography; genomics-structural;
D O I
10.1110/ps.051665905
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNase III enzymes are a highly conserved family of proteins that specifically cleave double-stranded (ds)RNA. These proteins are involved in a diverse group of functions, including ribosomal RNA processing, mRNA maturation and decay, snRNA and snoRNA processing, and RNA interference. Here we report the crystal structure of the nuclease domain of RNase III from the pathogen Mycobacterium tuberculosis. Although globally similar to other RNase III folds, this structure has some features not observed in previously reported models. These include the presence of an additional metal ion near the catalytic site, as well as conserved secondary structural elements that are proposed to have functional roles in the recognition of dsRNAs.
引用
收藏
页码:2744 / 2750
页数:7
相关论文
共 30 条
  • [1] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY
    BAILEY, S
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 760 - 763
  • [2] Electrostatics of nanosystems: Application to microtubules and the ribosome
    Baker, NA
    Sept, D
    Joseph, S
    Holst, MJ
    McCammon, JA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (18) : 10037 - 10041
  • [3] STRUCTURAL BASIS FOR THE 3'-5' EXONUCLEASE ACTIVITY OF ESCHERICHIA-COLI DNA-POLYMERASE-I - A 2 METAL-ION MECHANISM
    BEESE, LS
    STEITZ, TA
    [J]. EMBO JOURNAL, 1991, 10 (01) : 25 - 33
  • [4] Noncatalytic assembly of ribonuclease III with double-stranded RNA
    Blaszczyk, J
    Gan, JH
    Tropea, JE
    Court, DL
    Waugh, DS
    Ji, XH
    [J]. STRUCTURE, 2004, 12 (03) : 457 - 466
  • [5] Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage
    Blaszczyk, J
    Tropea, JE
    Bubunenko, M
    Routzahn, KM
    Waugh, DS
    Court, DL
    Ji, XH
    [J]. STRUCTURE, 2001, 9 (12) : 1225 - 1236
  • [6] Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
  • [7] Pre-steady-state and stopped-flow fluorescence analysis of Escherichia coli ribonuclease III:: Insights into mechanism and conformational changes associated with binding and catalysis
    Campbell, FE
    Cassano, AG
    Anderson, VE
    Harris, ME
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2002, 317 (01) : 21 - 40
  • [8] Ribonuclease III: new sense from nuisance
    Conrad, C
    Rauhut, R
    [J]. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY, 2002, 34 (02) : 116 - 129
  • [9] Court D.L., 1993, CONTROL MESSENGER RN, P71, DOI DOI 10.1016/B978-0-08-091652-1.50009-8
  • [10] Knowledge-based protein secondary structure assignment
    Frishman, D
    Argos, P
    [J]. PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1995, 23 (04): : 566 - 579