Noncatalytic assembly of ribonuclease III with double-stranded RNA

被引:111
作者
Blaszczyk, J [1 ]
Gan, JH [1 ]
Tropea, JE [1 ]
Court, DL [1 ]
Waugh, DS [1 ]
Ji, XH [1 ]
机构
[1] NCI, Ctr Canc Res, NIH, Frederick, MD 21702 USA
关键词
D O I
10.1016/j.str.2004.02.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ribonuclease III (RNase III) represents a family of double-stranded RNA (dsRNA) endonucleases. The simplest bacterial enzyme contains an endonuclease domain (endoND) and a dsRNA binding domain (dsRBD). RNase III can affect RNA structure and gene expression in either of two ways: as a dsRNA-processing enzyme that cleaves dsRNA, or as a dsRNA binding protein that binds but does not cleave dsRNA. We previously determined the endoND structure of Aquifex aeolicus RNase III (Aa-RNase III) and modeled a catalytic complex of full-length Aa-RNase III with dsRNA. Here, we present the crystal structure of Aa-RNase III in complex with dsRNA, revealing a noncatalytic assembly. The major differences between the two functional forms of RNase III(.)dsRNA are the conformation of the protein and the orientation and location of dsRNA. The flexibility of a 7 residue linker between the endoND and dsRBD enables the transition between these two forms.
引用
收藏
页码:457 / 466
页数:10
相关论文
共 45 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   AUTO-REGULATION OF RNASE-III OPERON BY MESSENGER-RNA PROCESSING [J].
BARDWELL, JCA ;
REGNIER, P ;
CHEN, SM ;
NAKAMURA, Y ;
GRUNBERGMANAGO, M ;
COURT, DL .
EMBO JOURNAL, 1989, 8 (11) :3401-3407
[3]   Role for a bidentate ribonuclease in the initiation step of RNA interference [J].
Bernstein, E ;
Caudy, AA ;
Hammond, SM ;
Hannon, GJ .
NATURE, 2001, 409 (6818) :363-366
[4]   Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage [J].
Blaszczyk, J ;
Tropea, JE ;
Bubunenko, M ;
Routzahn, KM ;
Waugh, DS ;
Court, DL ;
Ji, XH .
STRUCTURE, 2001, 9 (12) :1225-1236
[5]   Crystallographic refinement by simulated annealing: Methods and applications [J].
Brunger, AT ;
Rice, LM .
MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :243-269
[6]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[7]   NMR SOLUTION STRUCTURE OF A DSRNA BINDING DOMAIN FROM DROSOPHILA STAUFEN PROTEIN REVEALS HOMOLOGY TO THE N-TERMINAL DOMAIN OF RIBOSOMAL-PROTEIN S5 [J].
BYCROFT, M ;
GRUNERT, S ;
MURZIN, AG ;
PROCTOR, M ;
STJOHNSTON, D .
EMBO JOURNAL, 1995, 14 (14) :3563-3571
[8]   RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III [J].
Calin-Jageman, I ;
Nicholson, AW .
NUCLEIC ACIDS RESEARCH, 2003, 31 (09) :2381-2392
[9]   Ethidium-dependent uncoupling of substrate binding and cleavage by Escherichia coli ribonuclease III [J].
Calin-Jageman, I ;
Amarasinghe, AK ;
Nicholson, AW .
NUCLEIC ACIDS RESEARCH, 2001, 29 (09) :1915-1925
[10]   Gene silencing by double-stranded RNA [J].
Carthew, RW .
CURRENT OPINION IN CELL BIOLOGY, 2001, 13 (02) :244-248