Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

被引:283
作者
Swofford, DL
Waddell, PJ
Huelsenbeck, JP
Foster, PG
Lewis, PO
Rogers, JS
机构
[1] Smithsonian Inst, Natl Museum Nat Hist, Lab Mol Systemat, Support Ctr, Suitland, MD 20746 USA
[2] Massey Univ, Inst Mol BioSci, Palmerston North, New Zealand
[3] Univ Rochester, Dept Biol, Rochester, NY 14627 USA
[4] Univ Connecticut, Dept Ecol & Evolutionary Biol, Storrs, CT 06269 USA
[5] Univ New Orleans, Dept Biol Sci, New Orleans, LA 70148 USA
关键词
D O I
10.1080/106351501750435086
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
[No abstract available]
引用
收藏
页码:525 / 539
页数:15
相关论文
共 32 条
[1]   Topological bias and inconsistency of maximum likelihood using wrong models [J].
Bruno, WJ ;
Halpern, AL .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (04) :564-566
[2]   Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency [J].
Chang, JT .
MATHEMATICAL BIOSCIENCES, 1996, 137 (01) :51-73
[3]   Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters [J].
Chang, JT .
MATHEMATICAL BIOSCIENCES, 1996, 134 (02) :189-215
[4]  
Farris J. S., 1983, ADV CLADISTICS, P1
[5]   Parsimony jackknifing outperforms neighbor-joining [J].
Farris, JS ;
Albert, VA ;
Kallersjo, M ;
Lipscomb, D ;
Kluge, AG .
CLADISTICS, 1996, 12 (02) :99-124
[6]   Likelihood and inconsistency [J].
Farris, JS .
CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY, 1999, 15 (02) :199-204
[7]  
FARRIS JS, 1997, 16 M W HENN SOC G WA
[8]   PHYLOGENIES FROM MOLECULAR SEQUENCES - INFERENCE AND RELIABILITY [J].
FELSENSTEIN, J .
ANNUAL REVIEW OF GENETICS, 1988, 22 :521-565
[9]   CASES IN WHICH PARSIMONY OR COMPATIBILITY METHODS WILL BE POSITIVELY MISLEADING [J].
FELSENSTEIN, J .
SYSTEMATIC ZOOLOGY, 1978, 27 (04) :401-410
[10]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x