Modeling induced polarization with classical Drude oscillators: Theory and molecular dynamics simulation algorithm

被引:572
作者
Lamoureux, G
Roux, B
机构
[1] Univ Montreal, Dept Phys, Montreal, PQ H3C 3J7, Canada
[2] Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA
关键词
D O I
10.1063/1.1589749
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A simple treatment for incorporating induced polarization in computer simulations is formulated on the basis of the classical Drude oscillator model. In this model, electronic induction is represented by the displacement of a charge-carrying massless particle attached to a polarizable atom under the influence of the local electric field. The traditional self-consistent field (SCF) regime of induced polarization is reproduced if these auxiliary particles are allowed to relax instantaneously to their local energy minima for any given fixed configuration of the atoms in the system. In practice, such treatment is computationally prohibitive for generating molecular dynamics trajectories because the electric field must be recalculated several times iteratively to satisfy the SCF condition, and it is important to seek a more efficient way to simulate the classical Drude oscillator model. It is demonstrated that a close approximation to the SCF regime can be simulated efficiently by considering the dynamics of an extended Lagrangian in which a small mass is attributed to the auxiliary particles, and the amplitude of their oscillations away from the local energy minimum is controlled with a low-temperature thermostat. A simulation algorithm in this modified two-temperature isobaric-isothermal ensemble is developed. The algorithm is tested and illustrated using a rigid three-site water model with one additional Drude particle attached to the oxygen which is closely related to the polarizable SPC model of Ahlstrom [Mol. Phys. 68, 563 (1989)]. The tests with the extended Lagrangian show that stable and accurate molecular dynamics trajectories for large integration time steps (1 or 2 fs) can be generated and that liquid properties equivalent to SCF molecular dynamics can be reproduced at a fraction of the computational cost. (C) 2003 American Institute of Physics.
引用
收藏
页码:3025 / 3039
页数:15
相关论文
共 100 条
[11]   COOPERATIVE EFFECTS IN SIMULATED WATER [J].
BARNES, P ;
FINNEY, JL ;
NICHOLAS, JD ;
QUINN, JE .
NATURE, 1979, 282 (5738) :459-464
[12]   FINITE REPRESENTATION OF AN INFINITE BULK SYSTEM - SOLVENT BOUNDARY POTENTIAL FOR COMPUTER-SIMULATIONS [J].
BEGLOV, D ;
ROUX, B .
JOURNAL OF CHEMICAL PHYSICS, 1994, 100 (12) :9050-9063
[13]  
BELLE DV, 1995, COMPUT PHYS COMMUN, V91, P253
[14]  
Berendsen H., 1981, INTERMOLECULAR FORCE, V331, P331, DOI [DOI 10.1007/978-94-015-7658-1_21, 10.1007/978-94-015-7658, DOI 10.1007/978-94-015-7658]
[15]  
Bottcher C.J. F., 1973, THEORY ELECT POLARIZ, V1
[16]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[17]   THEORY OF POLARIZABLE LIQUID-CRYSTALS - OPTICAL BIREFRINGENCE [J].
CAO, JS ;
BERNE, BJ .
JOURNAL OF CHEMICAL PHYSICS, 1993, 99 (03) :2213-2220
[18]   Electrical response in chemical potential equalization schemes [J].
Chelli, R ;
Procacci, P ;
Righini, R ;
Califano, S .
JOURNAL OF CHEMICAL PHYSICS, 1999, 111 (18) :8569-8575
[19]  
Chiu SW, 2000, J COMPUT CHEM, V21, P121, DOI 10.1002/(SICI)1096-987X(20000130)21:2<121::AID-JCC4>3.0.CO
[20]  
2-W