SCOP: a structural classification of proteins database

被引:172
作者
Hubbard, TJP
Ailey, B
Brenner, SE
Murzin, AG
Chothia, C
机构
[1] Sanger Ctr, Hinxton CB10 1SA, Cambs, England
[2] MRC Ctr, Ctr Prot Engn, Cambridge CB2 2QH, England
[3] MRC Ctr, Mol Biol Lab, Cambridge CB2 2QH, England
[4] Stanford Univ, Dept Biol Struct, Stanford, CA 94305 USA
基金
英国惠康基金;
关键词
D O I
10.1093/nar/27.1.254
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far evolutionary relationships; the third, fold, describes geometrical relationships. The distinction between evolutionary relationships and those that arise from the physics and chemistry of proteins is a feature that is unique to this database, so far. The database can be used as a source of data to calibrate sequence search algorithms and for the generation of population statistics on protein structures. The database and its associated files are freely accessible from a number of WWW sites mirrored from URL http://scop.mrc-lmb.cam.ac.uk/scop/.
引用
收藏
页码:254 / 256
页数:3
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