Ser133 phosphate-KIX interactions in the CREB-CBP complex: an ab initio molecular dynamics study

被引:10
作者
Dal Peraro, M
Alber, F
Carloni, P
机构
[1] SISSA, Int Sch Adv Studies, I-34014 Trieste, Italy
[2] Univ Padua, Dipartimento Fis G Galilei, Padua, Italy
[3] ICGEB, Trieste, Italy
来源
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS | 2001年 / 30卷 / 01期
关键词
cyclic AMP response element binding protein phosphorylation; Car-Parrinello method; density functional theory; low barrier hydrogen bond;
D O I
10.1007/s002490000112
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Cyclic AMP response element binding protein (CREB) is involved in activation of transcriptional DNA machinery by binding to the coactivator CREB-binding protein (CBP). The interactions between CREB serine phosphate (pSer133) and specific CBP residues (Tyr658 and Lys662) play a crucial role for the thermodynamic stability of the CREB-CBP complex. Here we use ab initio methods to investigate the dynamics and energetics of a relatively large, fully hydrated model complex representing pSer133 and its counterparts of the CBP domain. The calculations suggest that: (1) key contributions to the stabilization of the complex arise not only from electrostatics las previously proposed) but also from a previously unrecognized "low-barrier hydrogen bond" between pSer133 and Lys662; (2) hydration prays a crucial role for the stabilization of the phosphate charge; (3) formation of the complex involves a significant degree of reorganization of the electronic charge density.
引用
收藏
页码:75 / 81
页数:7
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共 44 条
[41]   Hydrogen-bonding in glycine and malonaldehyde: Performance of the Lap1 correlation functional [J].
Sirois, S ;
Proynov, EI ;
Nguyen, DT ;
Salahub, DR .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (17) :6770-6781
[42]   Ab initio molecular dynamics simulation of liquids and solutions [J].
Sprik, M .
JOURNAL OF PHYSICS-CONDENSED MATTER, 1996, 8 (47) :9405-9409
[43]   EFFICIENT PSEUDOPOTENTIALS FOR PLANE-WAVE CALCULATIONS [J].
TROULLIER, N ;
MARTINS, JL .
PHYSICAL REVIEW B, 1991, 43 (03) :1993-2006
[44]   Molecular dynamics investigation of the structure of a fully hydrated gel-phase dipalmitoylphosphatidylcholine bilayer [J].
Tu, K ;
Tobias, DJ ;
Blasie, JK ;
Klein, ML .
BIOPHYSICAL JOURNAL, 1996, 70 (02) :595-608