Machine learning competition in immunology - Prediction of HLA class I binding peptides

被引：45

作者：

Zhang, Guang Lan ^{[1
]}

Ansari, Hifzur Rahman ^{[2
]}

Bradley, Phil ^{[3
]}

Cawley, Gavin C. ^{[4
]}

Hertz, Tomer ^{[3
]}

Hu, Xihao ^{[5
]}

Jojic, Nebojsa ^{[6
]}

Kim, Yohan ^{[7
]}

Kohlbacher, Oliver ^{[8
]}

Lund, Ole ^{[9
]}

Lundegaard, Claus ^{[9
]}

Magaret, Craig A. ^{[3
]}

Nielsen, Morten ^{[9
]}

Papadopoulos, Harris ^{[10
]}

Raghava, G. P. S. ^{[2
]}

Tal, Vider-Shalit ^{[11
]}

Xue, Li C. ^{[12
]}

Yanover, Chen ^{[3
]}

Zhu, Shanfeng ^{[5
]}

Rock, Michael T. ^{[13
]}

Crowe, James E. ^{[13
]}

Panayiotou, Christos ^{[14
]}

Polycarpou, Marios M. ^{[14
]}

Duch, Wlodzislaw ^{[15
,16
]}

Brusic, Vladimir ^{[1
]}

机构：

[1] Dana Farber Canc Inst, CVC, Boston, MA 02115 USA

[2] Inst Microbial Technol, Chandigarh, India

[3] Fred Hutchinson Canc Res Ctr, Seattle, WA 98104 USA

[4] Univ E Anglia, Norwich NR4 7TJ, Norfolk, England

[5] Fudan Univ, Shanghai 200433, Peoples R China

[6] Microsoft Res, Redmond, WA USA

[7] La Jolla Inst Allergy & Immunol, La Jolla, CA USA

[8] Univ Tubingen, Tubingen, Germany

[9] Danish Tech Univ, CBS, Lyngby, Denmark

[10] Frederick Univ, Nicosia, Cyprus

[11] Bar Ilan Univ, Ramat Gan, Israel

[12] Iowa State Univ, Ames, IA USA

[13] Vanderbilt Univ, Nashville, TN USA

[14] Univ Cyprus, Nicosia, Cyprus

[15] Nanyang Technol Univ, SCE, Singapore, Singapore

[16] Nicholas Copernicus Univ, Torun, Poland

来源：

JOURNAL OF IMMUNOLOGICAL METHODS | 2011年 / 374卷 / 1-2期

关键词：

Computational models; HLA; Human leukocyte antigen; Machine learning; Peptide binding; Predictions; T-CELL EPITOPES; IDENTIFICATION; DATABASE; SYSTEM;

D O I：

10.1016/j.jim.2011.09.010

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：1 / 4

页数：4

共 13 条

[1]

PARKER KC, 1994, J IMMUNOL, V152, P163

[2] A community resource benchmarking predictions of peptide binding to MHC-I molecules [J].

Peters, Bjoern ;

Bui, Huynh-Hoa ;

Frankild, Sune ;

Nielsen, Morten ;

Lundegaard, Claus ;

Kostem, Emrah ;

Basch, Derek ;

Lamberth, Kasper ;

Harndahl, Mikkel ;

Fleri, Ward ;

Wilson, Stephen S. ;

Sidney, John ;

Lund, Ole ;

Buus, Soren ;

Sette, Alessandro .

PLOS COMPUTATIONAL BIOLOGY, 2006, 2 (06) :574-584

[3] Identification of potential human respiratory syncytial virus and metapneumovirus T cell epitopes using computational prediction and MHC binding assays [J].

Rock, Michael T. ;

McKinney, Brett A. ;

Yoder, Sandra M. ;

Prudom, Catherine E. ;

Wright, David W. ;

Crowe, James E., Jr. .

JOURNAL OF IMMUNOLOGICAL METHODS, 2011, 374 (1-2) :13-17

[4]

Schuler Mathias M., 2007, V409, P75

[5] MEASURING THE ACCURACY OF DIAGNOSTIC SYSTEMS [J].

SWETS, JA .

SCIENCE, 1988, 240 (4857) :1285-1293

[6]

Toseland Christopher P, 2005, Immunome Res, V1, P4, DOI 10.1186/1745-7580-1-4

[7] MHC-I prediction using a combination of T cell epitopes and MHC-I binding peptides [J].

Vider-Shalit, Tal ;

Louzoun, Yoram .

JOURNAL OF IMMUNOLOGICAL METHODS, 2011, 374 (1-2) :43-46

[8] The Immune Epitope Database 2.0 [J].

Vita, Randi ;

Zarebski, Laura ;

Greenbaum, Jason A. ;

Emami, Hussein ;

Hoof, Ilka ;

Salimi, Nima ;

Damle, Rohini ;

Sette, Alessandro ;

Peters, Bjoern .

NUCLEIC ACIDS RESEARCH, 2010, 38 :D854-D862

[9] HLA class I molecules reflect an altered host proteome after influenza virus infection [J].

Wahl, Angela ;

Schafer, Fredda ;

Bardet, Wilfried ;

Hildebrand, William H. .

HUMAN IMMUNOLOGY, 2010, 71 (01) :14-22

[10]

Wulf M, 2009, METHODS MOL BIOL, V524, P361, DOI 10.1007/978-1-59745-450-6_26

← 1 2 →