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HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets
被引:467
作者
:
De Vries, Sjoerd J.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
De Vries, Sjoerd J.
van Dijk, Aalt D. J.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
van Dijk, Aalt D. J.
Krzeminski, Mickael
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Krzeminski, Mickael
van Dijk, Mark
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
van Dijk, Mark
Thureau, Aurelien
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Thureau, Aurelien
Hsu, Victor
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Hsu, Victor
Wassenaar, Tsjerk
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Wassenaar, Tsjerk
Bonvin, Alexandre M. J. J.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, Alexandre M. J. J.
[
1
]
机构
:
[1]
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
[2]
Oregon State Univ, Dept Biochem & Biophys, Corvallis, OR 97331 USA
来源
:
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
|
2007年
/ 69卷
/ 04期
关键词
:
D O I
:
10.1002/prot.21723
中图分类号
:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号
:
071010 ;
081704 ;
摘要
:
引用
收藏
页码:726 / 733
页数:8
相关论文
共 44 条
[1]
Molecular mimicry enables competitive recruitment by a natively disordered protein
[J].
Bonsor, Daniel A.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Bonsor, Daniel A.
;
Grishkovskaya, Irina
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Grishkovskaya, Irina
;
Dodson, Eleanor J.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Dodson, Eleanor J.
;
Kleanthous, Colin
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Kleanthous, Colin
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2007,
129
(15)
:4800
-4807
[2]
Flexible protein-protein docking
[J].
Bonvin, AM
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, AM
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2006,
16
(02)
:194
-200
[3]
Improved prediction of protein-protein binding sites using a support vector machines approach
[J].
Bradford, JR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Bradford, JR
;
Westhead, DR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Westhead, DR
.
BIOINFORMATICS,
2005,
21
(08)
:1487
-1494
[4]
Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation
[J].
Bressanelli, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Bressanelli, S
;
论文数:
引用数:
h-index:
机构:
Stiasny, K
;
Allison, SL
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Allison, SL
;
Stura, EA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Stura, EA
;
Duquerroy, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Duquerroy, S
;
Lescar, J
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Lescar, J
;
Heinz, FX
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Heinz, FX
;
Rey, FA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Rey, FA
.
EMBO JOURNAL,
2004,
23
(04)
:728
-738
[5]
FastContact: rapid estimate of contact and binding free energies
[J].
Camacho, CJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Pittsburgh, Dept Computat Biol, Pittsburgh, PA 15261 USA
Univ Pittsburgh, Dept Computat Biol, Pittsburgh, PA 15261 USA
Camacho, CJ
;
Zhang, C
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Pittsburgh, Dept Computat Biol, Pittsburgh, PA 15261 USA
Zhang, C
.
BIOINFORMATICS,
2005,
21
(10)
:2534
-2536
[6]
Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex
[J].
Carvalho, AL
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Carvalho, AL
;
Dias, FMV
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Dias, FMV
;
Prates, JAM
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Prates, JAM
;
Nagy, T
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Nagy, T
;
Gilbert, HJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Gilbert, HJ
;
Davies, GJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Davies, GJ
;
Ferreira, LMA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Ferreira, LMA
;
Romao, MJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Romao, MJ
;
Fontes, CMGA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Fontes, CMGA
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003,
100
(24)
:13809
-13814
[7]
Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data
[J].
Chen, HL
论文数:
0
引用数:
0
h-index:
0
机构:
Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA
Chen, HL
;
Zhou, HX
论文数:
0
引用数:
0
h-index:
0
机构:
Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA
Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA
Zhou, HX
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2005,
61
(01)
:21
-35
[8]
WHISCY: What information does surface conservation yield? Application to data-driven docking
[J].
de Vries, SJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
de Vries, SJ
;
van Dijk, ADJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
van Dijk, ADJ
;
Bonvin, AMJJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, AMJJ
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2006,
63
(03)
:479
-489
[9]
DeLano W. L., 2002, PYMOL
[10]
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
[J].
Dominguez, C
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Dominguez, C
;
Boelens, R
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Boelens, R
;
Bonvin, AMJJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, AMJJ
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2003,
125
(07)
:1731
-1737
←
1
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3
4
5
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共 44 条
[1]
Molecular mimicry enables competitive recruitment by a natively disordered protein
[J].
Bonsor, Daniel A.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Bonsor, Daniel A.
;
Grishkovskaya, Irina
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Grishkovskaya, Irina
;
Dodson, Eleanor J.
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Dodson, Eleanor J.
;
Kleanthous, Colin
论文数:
0
引用数:
0
h-index:
0
机构:
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
Kleanthous, Colin
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2007,
129
(15)
:4800
-4807
[2]
Flexible protein-protein docking
[J].
Bonvin, AM
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Fac Sci, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, AM
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2006,
16
(02)
:194
-200
[3]
Improved prediction of protein-protein binding sites using a support vector machines approach
[J].
Bradford, JR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Bradford, JR
;
Westhead, DR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Univ Leeds, Sch Biochem & Mol Biol, Leeds LS2 9JT, W Yorkshire, England
Westhead, DR
.
BIOINFORMATICS,
2005,
21
(08)
:1487
-1494
[4]
Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation
[J].
Bressanelli, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Bressanelli, S
;
论文数:
引用数:
h-index:
机构:
Stiasny, K
;
Allison, SL
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Allison, SL
;
Stura, EA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Stura, EA
;
Duquerroy, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Duquerroy, S
;
Lescar, J
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Lescar, J
;
Heinz, FX
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Heinz, FX
;
Rey, FA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Vienna, Inst Virol, Kinderspitalgasse 15, A-1095 Vienna, Austria
Rey, FA
.
EMBO JOURNAL,
2004,
23
(04)
:728
-738
[5]
FastContact: rapid estimate of contact and binding free energies
[J].
Camacho, CJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Pittsburgh, Dept Computat Biol, Pittsburgh, PA 15261 USA
Univ Pittsburgh, Dept Computat Biol, Pittsburgh, PA 15261 USA
Camacho, CJ
;
Zhang, C
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Pittsburgh, Dept Computat Biol, Pittsburgh, PA 15261 USA
Zhang, C
.
BIOINFORMATICS,
2005,
21
(10)
:2534
-2536
[6]
Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex
[J].
Carvalho, AL
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Carvalho, AL
;
Dias, FMV
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Dias, FMV
;
Prates, JAM
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Prates, JAM
;
Nagy, T
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Nagy, T
;
Gilbert, HJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Gilbert, HJ
;
Davies, GJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Davies, GJ
;
Ferreira, LMA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Ferreira, LMA
;
Romao, MJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Romao, MJ
;
Fontes, CMGA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Univ Nova Lisboa, Fac Ciencias & Tecnol, Dept Quim, REQUIMTE CQFB, P-2829516 Caparica, Portugal
Fontes, CMGA
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003,
100
(24)
:13809
-13814
[7]
Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data
[J].
Chen, HL
论文数:
0
引用数:
0
h-index:
0
机构:
Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA
Chen, HL
;
Zhou, HX
论文数:
0
引用数:
0
h-index:
0
机构:
Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA
Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA
Zhou, HX
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2005,
61
(01)
:21
-35
[8]
WHISCY: What information does surface conservation yield? Application to data-driven docking
[J].
de Vries, SJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
de Vries, SJ
;
van Dijk, ADJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
van Dijk, ADJ
;
Bonvin, AMJJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, AMJJ
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2006,
63
(03)
:479
-489
[9]
DeLano W. L., 2002, PYMOL
[10]
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
[J].
Dominguez, C
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Dominguez, C
;
Boelens, R
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Boelens, R
;
Bonvin, AMJJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Univ Utrecht, Dept NMr Spect, Bijvoet Ctr Biomol Res, NL-3584 CH Utrecht, Netherlands
Bonvin, AMJJ
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2003,
125
(07)
:1731
-1737
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