On the flexibility of β-peptides

被引:49
作者
Beke, T
Csizmadia, IG
Perczel, A
机构
[1] Eotvos Lorand Univ, Dept Organ Chem, H-1518 Budapest 112, Hungary
[2] Univ Toronto, Dept Chem, Toronto, ON M5S 1A1, Canada
关键词
beta-peptides; ab initio and DFT computation; structure and stability; Ramachandran surface; flexibility; conformation and topology; beta-amino acids;
D O I
10.1002/jcc.10357
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The full conformational space was explored for an achiral and two chiral beta-peptide models: namely For-beta-Ala-NH(2). For-beta-Abu-NH(2), and For-beta-Aib-NH(2). Stability and conformational properties of all three model systems were computed at different levels of theory: RHF/3-21G, B3LYP/6-311 + + G(d,p)//RHF/3-21G, B3LYP/6-311 + + G(d,p), MP2//B3LYP/6-311 + + G(d,p), CCSD//B3LYP/6-311 + + G(d,p), and CCSD(T)//B3LYP/6-311 + + G(d,p). In addition, ab initio, E = E(phi, mu, psi) potential energy hypersurfaces of all three models were determined, and their topologies were analyzed to determine the inherent flexibility properties of these beta-peptide models. Fewer points were found and assigned than expected on the basis of Multidimensional Conformational Analysis (MDCA). Furthermore, it has been demonstrated, that the four-dimensional surface, E = E(phi, mu, psi), can be reduced into a three-dimensional one: E = E[phi, f(phi), psi]. This reduction of dimensionality of freedom of motion suggests that beta-peptides are less flexible than one would have thought. This agrees with experimental data published on the conformational properties of peptides composed of beta-amino acid residues.
引用
收藏
页码:285 / 307
页数:23
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