Origin and evolutionary analysis of the plant-specific TIFY transcription factor family

被引：230

作者：

Bai, Youhuang ^{[2
,3
]}

Meng, Yijun ^{[1
]}

Huang, Donglin ^{[2
,3
]}

Qi, Yanhua ^{[1
]}

Chen, Ming ^{[1
,2
,3
]}

机构：

[1] Zhejiang Univ, Coll Life Sci, State Key Lab Plant Physiol & Biochem, Hangzhou 310058, Zhejiang, Peoples R China

[2] Zhejiang Univ, Coll Life Sci, Dept Bioinformat, Hangzhou 310058, Zhejiang, Peoples R China

[3] Zhejiang Univ, Coll Life Sci, James D Watson Inst Genome Sci, Hangzhou 310058, Zhejiang, Peoples R China

来源：

GENOMICS | 2011年 / 98卷 / 02期

关键词：

Comparative genomic analysis; TIFY domain; JAZ; ZML; PPD; MULTIPLE SEQUENCE ALIGNMENT; PHYLOGENETIC ANALYSIS; JASMONATE; PROTEIN; REPRESSION; MOTIF; ZIM; DIVERGENCE; EXPRESSION; RECEPTOR;

D O I：

10.1016/j.ygeno.2011.05.002

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

A substantial number of transcription factor families have been investigated from all kingdoms of life, but a particular class of plant-specific TIFY transcription factors, characterized by a highly conserved TIFY domain, lacks a systemic analysis of its origin and evolutionary relationships among different plant species. After exhaustive genome-wide searches against 14 genomes, TIFY transcription factors were identified and classified into four subfamilies TIFY, PPD, JAZ and ZML according to their different domain architectures. Results show that the TIFY domain of the ZML subfamily possesses a core "TLS[F/Y]XG" motifrather than the "TIFYXG" motif that is dominant in the other three subfamilies. A comprehensive survey of the TIFY family allowed us to discover a new group within the JAZ subfamily and to identify several novel conserved motifs via phylogenetic analysis. Evolutional analysis indicates that whole genome duplication and tandem duplication contributed to the expansion of the TIFY family in plants. (C) 2011 Elsevier Inc. All rights reserved.

引用

页码：128 / 136

页数：9

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