Phylogeny and characterization of three nifH-homologous genes from Paenibacillus azotofixans

被引:28
作者
Choo, QC [1 ]
Samian, MR [1 ]
Najimudin, N [1 ]
机构
[1] Univ Sains Malaysia, Sch Biol Sci, George Town 11800, Malaysia
关键词
D O I
10.1128/AEM.69.6.3658-3662.2003
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
In this paper, we report the cloning and characterization of three Paenibacillus azotofixans DNA regions containing genes involved in nitrogen fixation. Sequencing analysis revealed the presence of nijB1H1D1K1 gene organization in the 4,607-bp SacI DNA fragment. This is the first report of linkage of a nifB open reading frame upstream of the structural nif genes. The second (nifB2H2) and third (nifH3) nif homologues are confined within the 6,350-bp HindIII and 2,840-bp EcoRI DNA fragments, respectively. Phylogenetic analysis demonstrated that NifH1 and NifH2 form a monophyletic group among cyanobacterial NifH proteins. NifH3, on the other hand, clusters among NifH proteins of the highly divergent methanogenic archaea.
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页码:3658 / 3662
页数:5
相关论文
共 36 条
[1]   Comparative phylogeny of rrs and nifH genes in the Bacillaceae [J].
Achouak, W ;
Normand, P ;
Heulin, T .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1999, 49 :961-967
[2]  
ALVAREZMORALES A, 1986, NUCLEIC ACIDS RES, V14, P4207
[3]   PHYLOGENETIC HETEROGENEITY OF THE GENUS BACILLUS REVEALED BY COMPARATIVE-ANALYSIS OF SMALL-SUBUNIT-RIBOSOMAL RNA SEQUENCES [J].
ASH, C ;
FARROW, JAE ;
WALLBANKS, S ;
COLLINS, MD .
LETTERS IN APPLIED MICROBIOLOGY, 1991, 13 (04) :202-206
[4]   COMPLETE NUCLEOTIDE-SEQUENCE OF THE AZOTOBACTER-VINELANDII NITROGENASE STRUCTURAL GENE-CLUSTER [J].
BRIGLE, KE ;
NEWTON, WE ;
DEAN, DR .
GENE, 1985, 37 (1-3) :37-44
[5]   CLONING, DNA-SEQUENCING, AND CHARACTERIZATION OF A NIFD-HOMOLOGOUS GENE FROM THE ARCHAEON METHANOSARCINA-BARKERI-227 WHICH RESEMBLES NIFD1 FROM THE EUBACTERIUM CLOSTRIDIUM-PASTEURIANUM [J].
CHIEN, YT ;
ZINDER, SH .
JOURNAL OF BACTERIOLOGY, 1994, 176 (21) :6590-6598
[6]   Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227 [J].
Chien, YT ;
Zinder, SH .
JOURNAL OF BACTERIOLOGY, 1996, 178 (01) :143-148
[7]  
Dean DR, 1992, BIOL NITROGEN FIXATI, P763
[8]   INOCULATION IN VITRO OF WHEAT SEEDLINGS AND WHEAT STRAW CULTURES WITH BACILLUS-AZOTOFIXANS [J].
DELIMA, BD ;
PENIDO, EGC .
PLANT AND SOIL, 1989, 113 (01) :133-136
[9]   CLUSTAL - A PACKAGE FOR PERFORMING MULTIPLE SEQUENCE ALIGNMENT ON A MICROCOMPUTER [J].
HIGGINS, DG ;
SHARP, PM .
GENE, 1988, 73 (01) :237-244
[10]   ASSESSING HORIZONTAL TRANSFER OF NIFHDK GENES IN EUBACTERIA - NUCLEOTIDE-SEQUENCE OF NIFK FROM FRANKIA STRAIN HFPCCI3 [J].
HIRSCH, AM ;
MCKHANN, HI ;
REDDY, A ;
LIAO, JY ;
FANG, YW ;
MARSHALL, CR .
MOLECULAR BIOLOGY AND EVOLUTION, 1995, 12 (01) :16-27