A sequencer of thirty bases that is highly repetitive in archaebacterial genomes

被引:3
作者
Suckow, JM
Suzuki, M
机构
[1] CREST Ctr Stuct Biol, NIBHT, AIST, Tsukuba, Ibaraki 3050046, Japan
[2] Univ Tokyo, Grad Sch Human & Environm Sci, Meguro Ku, Tokyo 1530041, Japan
来源
PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES | 1999年 / 75卷 / 01期
关键词
archaea; genome analysis; bacterial evolution; homologous recombination; symbiogenesis hypothesis;
D O I
10.2183/pjab.75.16
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In the genomes of various archaebacterial species essentially the some sequence of approximately 30 bp is identified repeating over 100 times positioned in several clusters. The periodicity of the repeat is close to 67 bp, having a linker of approximately 37 bp between neighbouring units. Small differences found between the units are essentially the signatures that specify first the cluster, and second the archaebacterial species to which the units belong. Similar repeats are found in the genomic DNA sequences of eubacterial species, Aquifex aeolicus, and Myobacterium tuberculosis.
引用
收藏
页码:16 / 21
页数:6
相关论文
共 31 条
[1]   P1 PLASMID REPLICATION - REPLICON STRUCTURE [J].
ABELES, AL ;
SNYDER, KM ;
CHATTORAJ, DK .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 173 (03) :307-324
[2]   GenBank [J].
Benson, DA ;
Boguski, MS ;
Lipman, DJ ;
Ostell, J ;
Ouellette, BFF .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :1-7
[3]   The complete genome sequence of Escherichia coli K-12 [J].
Blattner, FR ;
Plunkett, G ;
Bloch, CA ;
Perna, NT ;
Burland, V ;
Riley, M ;
ColladoVides, J ;
Glasner, JD ;
Rode, CK ;
Mayhew, GF ;
Gregor, J ;
Davis, NW ;
Kirkpatrick, HA ;
Goeden, MA ;
Rose, DJ ;
Mau, B ;
Shao, Y .
SCIENCE, 1997, 277 (5331) :1453-+
[4]   Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii [J].
Bult, CJ ;
White, O ;
Olsen, GJ ;
Zhou, LX ;
Fleischmann, RD ;
Sutton, GG ;
Blake, JA ;
FitzGerald, LM ;
Clayton, RA ;
Gocayne, JD ;
Kerlavage, AR ;
Dougherty, BA ;
Tomb, JF ;
Adams, MD ;
Reich, CI ;
Overbeek, R ;
Kirkness, EF ;
Weinstock, KG ;
Merrick, JM ;
Glodek, A ;
Scott, JL ;
Geoghagen, NSM ;
Weidman, JF ;
Fuhrmann, JL ;
Nguyen, D ;
Utterback, TR ;
Kelley, JM ;
Peterson, JD ;
Sadow, PW ;
Hanna, MC ;
Cotton, MD ;
Roberts, KM ;
Hurst, MA ;
Kaine, BP ;
Borodovsky, M ;
Klenk, HP ;
Fraser, CM ;
Smith, HO ;
Woese, CR ;
Venter, JC .
SCIENCE, 1996, 273 (5278) :1058-1073
[5]   Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence [J].
Cole, ST ;
Brosch, R ;
Parkhill, J ;
Garnier, T ;
Churcher, C ;
Harris, D ;
Gordon, SV ;
Eiglmeier, K ;
Gas, S ;
Barry, CE ;
Tekaia, F ;
Badcock, K ;
Basham, D ;
Brown, D ;
Chillingworth, T ;
Connor, R ;
Davies, R ;
Devlin, K ;
Feltwell, T ;
Gentles, S ;
Hamlin, N ;
Holroyd, S ;
Hornby, T ;
Jagels, K ;
Krogh, A ;
McLean, J ;
Moule, S ;
Murphy, L ;
Oliver, K ;
Osborne, J ;
Quail, MA ;
Rajandream, MA ;
Rogers, J ;
Rutter, S ;
Seeger, K ;
Skelton, J ;
Squares, R ;
Squares, S ;
Sulston, JE ;
Taylor, K ;
Whitehead, S ;
Barrell, BG .
NATURE, 1998, 393 (6685) :537-+
[6]   The complete genome of the hyperthermophilic bacterium Aquifex aeolicus [J].
Deckert, G ;
Warren, PV ;
Gaasterland, T ;
Young, WG ;
Lenox, AL ;
Graham, DE ;
Overbeek, R ;
Snead, MA ;
Keller, M ;
Aujay, M ;
Huber, R ;
Feldman, RA ;
Short, JM ;
Olsen, GJ ;
Swanson, RV .
NATURE, 1998, 392 (6674) :353-358
[7]  
Felsenstein J, 1996, METHOD ENZYMOL, V266, P418
[8]   WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD [J].
FLEISCHMANN, RD ;
ADAMS, MD ;
WHITE, O ;
CLAYTON, RA ;
KIRKNESS, EF ;
KERLAVAGE, AR ;
BULT, CJ ;
TOMB, JF ;
DOUGHERTY, BA ;
MERRICK, JM ;
MCKENNEY, K ;
SUTTON, G ;
FITZHUGH, W ;
FIELDS, C ;
GOCAYNE, JD ;
SCOTT, J ;
SHIRLEY, R ;
LIU, LI ;
GLODEK, A ;
KELLEY, JM ;
WEIDMAN, JF ;
PHILLIPS, CA ;
SPRIGGS, T ;
HEDBLOM, E ;
COTTON, MD ;
UTTERBACK, TR ;
HANNA, MC ;
NGUYEN, DT ;
SAUDEK, DM ;
BRANDON, RC ;
FINE, LD ;
FRITCHMAN, JL ;
FUHRMANN, JL ;
GEOGHAGEN, NSM ;
GNEHM, CL ;
MCDONALD, LA ;
SMALL, KV ;
FRASER, CM ;
SMITH, HO ;
VENTER, JC .
SCIENCE, 1995, 269 (5223) :496-512
[9]   THE MINIMAL GENE COMPLEMENT OF MYCOPLASMA-GENITALIUM [J].
FRASER, CM ;
GOCAYNE, JD ;
WHITE, O ;
ADAMS, MD ;
CLAYTON, RA ;
FLEISCHMANN, RD ;
BULT, CJ ;
KERLAVAGE, AR ;
SUTTON, G ;
KELLEY, JM ;
FRITCHMAN, JL ;
WEIDMAN, JF ;
SMALL, KV ;
SANDUSKY, M ;
FUHRMANN, J ;
NGUYEN, D ;
UTTERBACK, TR ;
SAUDEK, DM ;
PHILLIPS, CA ;
MERRICK, JM ;
TOMB, JF ;
DOUGHERTY, BA ;
BOTT, KF ;
HU, PC ;
LUCIER, TS ;
PETERSON, SN ;
SMITH, HO ;
HUTCHISON, CA ;
VENTER, JC .
SCIENCE, 1995, 270 (5235) :397-403
[10]   Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi [J].
Fraser, CM ;
Casjens, S ;
Huang, WM ;
Sutton, GG ;
Clayton, R ;
Lathigra, R ;
White, O ;
Ketchum, KA ;
Dodson, R ;
Hickey, EK ;
Gwinn, M ;
Dougherty, B ;
Tomb, JF ;
Fleischmann, RD ;
Richardson, D ;
Peterson, J ;
Kerlavage, AR ;
Quackenbush, J ;
Salzberg, S ;
Hanson, M ;
vanVugt, R ;
Palmer, N ;
Adams, MD ;
Gocayne, J ;
Weidman, J ;
Utterback, T ;
Watthey, L ;
McDonald, L ;
Artiach, P ;
Bowman, C ;
Garland, S ;
Fujii, C ;
Cotton, MD ;
Horst, K ;
Roberts, K ;
Hatch, B ;
Smith, HO ;
Venter, JC .
NATURE, 1997, 390 (6660) :580-586