Colonic microbiota signatures across five northern European countries

被引:195
作者
Lay, C
Rigottier-Gois, L
Holmstrom, K
Rajilic, M
Vaughan, EE
de Vos, WM
Collins, MD
Thiel, R
Namsolleck, P
Blaut, M
Doré, J
机构
[1] INRA, UEPSD, F-78352 Jouy En Josas, France
[2] Bioneer AS, DK-2970 Horsholm, Denmark
[3] Univ Wageningen & Res Ctr, Microbiol Lab, NL-6703 CT Wageningen, Netherlands
[4] Univ Reading, Sch Food Biosci, Reading RG6 6AP, Berks, England
[5] Deutsch Inst Ernahrungsforsch Potsdam Rehbrucke, Dept Gastrointestinal Microbiol, D-14558 Nuthetal, Germany
关键词
D O I
10.1128/AEM.71.7.4153-4155.2005
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The composition of the colonic microbiota of 91 northern Europeans was characterized by fluorescent in situ hybridization using 18 phylogenetic probes. On average 75% of the bacteria were identified, and large interindividual variations were observed. Clostridium coccoides and Clostridium leptum were the dominant groups (28.0% and 25.2%), followed by the Bacteroides (8.5%). According to principal component analysis, no significant grouping with respect to geographic origin, age, or gender was observed.
引用
收藏
页码:4153 / 4155
页数:3
相关论文
共 14 条
[1]   PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION [J].
AMANN, RI ;
LUDWIG, W ;
SCHLEIFER, KH .
MICROBIOLOGICAL REVIEWS, 1995, 59 (01) :143-169
[2]  
Franks AH, 1998, APPL ENVIRON MICROB, V64, P3336
[3]   Extensive set of 16S rRNA-based probes for detection of bacteria in human feces [J].
Harmsen, HJM ;
Raangs, GC ;
He, T ;
Degener, JE ;
Welling, GW .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (06) :2982-2990
[4]  
LAY C, IN PRESS ENV MICROBI
[5]   Molecular inventory of faecal microflora in patients with Crohn's disease [J].
Mangin, I ;
Bonnet, R ;
Seksik, P ;
Rigottier-Gois, L ;
Sutren, M ;
Bouhnik, Y ;
Neut, C ;
Collins, MD ;
Colombel, JF ;
Marteau, P ;
Doré, J .
FEMS MICROBIOLOGY ECOLOGY, 2004, 50 (01) :25-36
[6]   Nutrigenomics:: goals and strategies [J].
Müller, M ;
Kersten, S .
NATURE REVIEWS GENETICS, 2003, 4 (04) :315-322
[7]   Enumeration of Bacteroides species in human faeces by fluorescent in situ hybridisation combined with flow cytometry using 16S rRNA probes [J].
Rigottier-Gois, L ;
Rochet, V ;
Garrec, N ;
Suau, A ;
Doré, J .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2003, 26 (01) :110-118
[8]  
Rigottier-Gois L, 2003, FEMS MICROBIOL ECOL, V43, P237, DOI 10.1111/j.1574-6941.2003.tb01063.x
[9]   Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes [J].
Schwiertz, A ;
Le Blay, G ;
Blaut, M .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (01) :375-382
[10]  
Suau A, 1999, APPL ENVIRON MICROB, V65, P4799