Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects

被引:145
作者
Degnan, PH [1 ]
Lazarus, AB [1 ]
Wernegreen, JJ [1 ]
机构
[1] Marine Biol Lab, Josephine Bay Paul Ctr Comparat Mol Biol & Evolut, Woods Hole, MA 02543 USA
关键词
D O I
10.1101/gr.3771305
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The distinct lifestyle of obligately intracellular bacteria call alter fundamental forces that drive and constrain genome change. In this Study, sequencing the 792-kb genome of Blochmannia pennsylvanicus, an obligate endosymbiont of Camponotus pennsylvanicus, enabled LIS to trace evolutionary changes that occured in the context of a bacterial-ant association. Comparison to the genome of Blochmannia floridanus reveals differential loss of genes involved in cofactor biosynthesis, the composition and structure of the cell wall and membrane, gene regulation, and DNA replication. However, the two Blochmannia species show complete conservation in the order and strand orientation of shared genes. This finding of extreme stasis in genome architecture, also reported previously for the aphid endosymbiont Buchnera, Suggests that genome stability characterizes long-term bacterial mutualists of insects and constrains their evolutionary potential. Genome-wide analyses of protein divergences reveal 10- to 50-fold faster amino acid Substitution rates in Blochmannia compared to related bacteria. Despite these varying features of genome evolution, a striking correlation in the relative divergences of proteins indicates parallel functional constraints oil gene functions across ecologically distinct bacterial groups. furthermore, the increased rates of amino acid substitution and gene loss in Blochmannia have Occurred in a lineage-specific fashion, which may reflect life history differences of their ant hosts.
引用
收藏
页码:1023 / 1033
页数:11
相关论文
共 73 条
[1]   Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia [J].
Akman, L ;
Yamashita, A ;
Watanabe, H ;
Oshima, K ;
Shiba, T ;
Hattori, M ;
Aksoy, S .
NATURE GENETICS, 2002, 32 (03) :402-407
[2]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[3]   A ''double adaptor'' method for improved shotgun library construction [J].
Andersson, B ;
Wentland, MA ;
Ricafrente, JY ;
Liu, W ;
Gibbs, RA .
ANALYTICAL BIOCHEMISTRY, 1996, 236 (01) :107-113
[4]   Evolutionary forces in shaping the codon and amino acid usages in Blochmannia floridanus [J].
Banerjee, T ;
Basak, S ;
Gupta, SK ;
Ghosh, TC .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2004, 22 (01) :13-23
[5]   Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression [J].
Baranov, PV ;
Hammer, AW ;
Zhou, JD ;
Gesteland, RF ;
Atkins, JF .
GENOME BIOLOGY, 2005, 6 (03)
[6]   RECODE 2003 [J].
Baranov, PV ;
Gurvich, OL ;
Hammer, AW ;
Gesteland, RF ;
Atkins, JF .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :87-89
[7]   Recoding: translational bifurcations in gene expression [J].
Baranov, PV ;
Gesteland, RF ;
Atkins, JF .
GENE, 2002, 286 (02) :187-201
[8]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkr1065, 10.1093/nar/gkh121]
[9]  
BAUMANN P, 2000, PROKARYOTES HDB BIOL
[10]   Single nucleotide+1 frameshifts in an apparently functional mitochondrial cytochrome b gene in ants of the genus Polrhachis [J].
Beckenbach, AT ;
Robson, SKA ;
Crozier, RH .
JOURNAL OF MOLECULAR EVOLUTION, 2005, 60 (02) :141-152