A Versatile DNA Nanochip for Direct Analysis of DNA Base-Excision Repair

被引:91
作者
Endo, Masayuki [1 ,3 ]
Katsuda, Yousuke [2 ]
Hidaka, Kumi [2 ]
Sugiyama, Hiroshi [1 ,2 ,3 ]
机构
[1] Kyoto Univ, Inst Integrated Cell Mat Sci iCeMS, Sakyo Ku, Kyoto 6068501, Japan
[2] Kyoto Univ, Dept Chem, Grad Sch Sci, Sakyo Ku, Kyoto 6068502, Japan
[3] Japan Sci & Technol Corp JST, Chiyoda Ku, Tokyo 1020075, Japan
关键词
DNA damage; enzymes; nanostructures; scanning probe microscopy; single-molecule studies; PYRIMIDINE DIMER; STRUCTURAL BASIS; 8-OXOGUANINE; RECOGNITION; DAMAGE;
D O I
10.1002/anie.201003604
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Repair kit: The single DNA-repair enzymes 8-oxoguanine glycosylase and T4 pyrimidine dimer glycosylase were analyzed by a nanoscale DNA chip containing two double-stranded DNA molecules (see picture). Dynamic movement of the enzymes and the single DNA-repair reaction on the DNA nanochip was visualized by fast-scanning atomic force microscopy. Copyright © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
引用
收藏
页码:9412 / 9416
页数:5
相关论文
共 14 条
[1]   A high-speed atomic force microscope for studying biological macromolecules [J].
Ando, T ;
Kodera, N ;
Takai, E ;
Maruyama, D ;
Saito, K ;
Toda, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (22) :12468-12472
[2]   Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA [J].
Bruner, SD ;
Norman, DPG ;
Verdine, GL .
NATURE, 2000, 403 (6772) :859-866
[3]   Direct visualization of a DNA glycosylase searching for damage [J].
Chen, LW ;
Haushalter, KA ;
Lieber, CM ;
Verdine, GL .
CHEMISTRY & BIOLOGY, 2002, 9 (03) :345-350
[4]   Base-excision repair of oxidative DNA damage [J].
David, Sheila S. ;
O'Shea, Valerie L. ;
Kundu, Sucharita .
NATURE, 2007, 447 (7147) :941-950
[5]   EVIDENCE FOR AN IMINO INTERMEDIATE IN THE T4-ENDONUCLEASE-V REACTION [J].
DODSON, ML ;
SCHROCK, RD ;
LLOYD, RS .
BIOCHEMISTRY, 1993, 32 (32) :8284-8290
[6]  
DODSON ML, 1994, J BIOL CHEM, V269, P32709
[7]   Regulation of DNA Methylation Using Different Tensions of Double Strands Constructed in a Defined DNA Nanostructure [J].
Endo, Masayuki ;
Katsuda, Yousuke ;
Hidaka, Kumi ;
Sugiyama, Hiroshi .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (05) :1592-1597
[8]   Chemical Approaches to DNA Nanotechnology [J].
Endo, Masayuki ;
Sugiyama, Hiroshi .
CHEMBIOCHEM, 2009, 10 (15) :2420-2443
[9]   How do site-specific DNA-binding proteins find their targets? [J].
Halford, SE ;
Marko, JF .
NUCLEIC ACIDS RESEARCH, 2004, 32 (10) :3040-3052
[10]   X-RAY STRUCTURE OF T4 ENDONUCLEASE-V - AN EXCISION REPAIR ENZYME SPECIFIC FOR A PYRIMIDINE DIMER [J].
MORIKAWA, K ;
MATSUMOTO, O ;
TSUJIMOTO, M ;
KATAYANAGI, K ;
ARIYOSHI, M ;
DOI, T ;
IKEHARA, M ;
INAOKA, T ;
OHTSUKA, E .
SCIENCE, 1992, 256 (5056) :523-526