Proteomics in developmental toxicology

被引:10
作者
Barrier, M [1 ]
Mirkes, PE [1 ]
机构
[1] Univ Washington, Dept Pediat, Div Genet & Dev Med, Birth Defects Res Lab, Seattle, WA 98195 USA
基金
美国国家卫生研究院;
关键词
proteomics; toxicology; 2D gel electrophoresis; DIGE; mass spectrometry; MS/MS; MUDPIT; ICAT; protein arrays; post-translational modifications;
D O I
10.1016/j.reprotox.2004.09.001
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The objective of this presentation is to review the major proteomic technologies available to developmental texicologists and, when possible, to provide examples of how various proteomic technologies have been used in developmental toxicology or toxicology in general. The field of protcomics is too broad for us to go into great depth about each technology, so we have attempted to provide brief overviews supplemented with many references that cover the subjects in more detail. Proteomics tools produce a global view of complex biological systems by examining complex protein mixtures using large-scale, high-throughput technologies. These technologies speed up the process of protein separation, quantification, and identification. As an important complement to genomics, proteomics allows for the examination of the entire complement of proteins in an organism, tissue, or cell-type. Current proteomics technologies not only identify protein expression, but also post-translational modifications and protein interactions. The field of proteomics is expanding rapidly to provide greater volume and quality of protein information to help understand the multifaceted nature of biological systems. (C) 2004 Published by Elsevier Inc.
引用
收藏
页码:291 / 304
页数:14
相关论文
共 190 条
[11]  
Bader GD, 2003, NUCLEIC ACIDS RES, V31, P248, DOI 10.1093/nar/gkg056
[12]   Sequence mapping of epoxide adducts in human hemoglobin with LC-tandem MS and the salsa algorithm [J].
Badghisi, H ;
Liebler, DC .
CHEMICAL RESEARCH IN TOXICOLOGY, 2002, 15 (06) :799-805
[13]  
BARLOW PB, 1974, AM REV RESPIR DIS, V110, P371
[14]  
BARRIER M, 2003, P TER SOC ANN M PHIL, P315
[15]   A protein linkage map of Escherichia coli bacteriophage T7 [J].
Bartel, PL ;
Roecklein, JA ;
SenGupta, D ;
Fields, S .
NATURE GENETICS, 1996, 12 (01) :72-77
[16]   PLASMA HYDRAZINE CONCENTRATIONS IN MAN AFTER ISONIAZID AND HYDRALAZINE ADMINISTRATION [J].
BLAIR, IA ;
TINOCO, RM ;
BRODIE, MJ ;
CLARE, RA ;
DOLLERY, CT ;
TIMBRELL, JA ;
BEEVER, IA .
HUMAN TOXICOLOGY, 1985, 4 (02) :195-202
[17]   The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 [J].
Boeckmann, B ;
Bairoch, A ;
Apweiler, R ;
Blatter, MC ;
Estreicher, A ;
Gasteiger, E ;
Martin, MJ ;
Michoud, K ;
O'Donovan, C ;
Phan, I ;
Pilbout, S ;
Schneider, M .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :365-370
[18]   Identification of in-gel digested proteins by complementary peptide mass fingerprinting and tandem mass spectrometry data obtained on an electrospray ionization quadrupole time-of-flight mass spectrometer [J].
Borchers, C ;
Peter, JF ;
Hall, MC ;
Kunkel, TA ;
Tomer, KB .
ANALYTICAL CHEMISTRY, 2000, 72 (06) :1163-1168
[19]   Antibodies in diagnostics - from immunoassays to protein chips [J].
Borrebaeck, CAK .
IMMUNOLOGY TODAY, 2000, 21 (08) :379-382
[20]   Design and synthesis of visible isotope-coded affinity tags for the absolute quantification of specific proteins in complex mixtures [J].
Bottari, P ;
Aebersold, R ;
Turecek, F ;
Gelb, MH .
BIOCONJUGATE CHEMISTRY, 2004, 15 (02) :380-388