The solution structure of bovine pancreatic trypsin inhibitor at high pressure

被引:43
作者
Williamson, MP
Akasaka, K
Refaee, M
机构
[1] Univ Sheffield, Dept Mol Biol & Biotechnol, Sheffield S10 2TN, S Yorkshire, England
[2] Kinki Univ, Fac Biol Oriented Sci & Technol, Dept Biotechnol Sci, Wakayama 6496493, Japan
关键词
pressure; protein compression; chemical shifts; NMR; buried water; active site;
D O I
10.1110/ps.0242103
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The solution structure of bovine pancreatic trypsin inhibitor (BPTI) at a pressure of 2 kbar is presented. The structure was calculated as a change from an energy-minimized low-pressure structure, using H-1 chemical shifts as restraints. The structure has changed by 0.24 Angstrom RMS, and has almost unchanged volume. The largest changes as a result of pressure are in the loop 10-16, which contains the active site of BPTI, and residues 38-42, which are adjacent to buried water molecules. Hydrogen bonds are compressed by 0.029 +/- 0.117 Angstrom, with the longer hydrogen bonds, including those to internal buried water molecules, being compressed more. The hydrophobic core is also compressed, largely from reduction of packing defects. The parts of the structure that have the greatest change are close to buried water molecules, thus highlighting the importance of water molecules as the nucleation sites for volume fluctuation of proteins in native conditions.
引用
收藏
页码:1971 / 1979
页数:9
相关论文
共 33 条
[31]   APPLICATION OF H-1-NMR CHEMICAL-SHIFTS TO MEASURE THE QUALITY OF PROTEIN STRUCTURES [J].
WILLIAMSON, MP ;
KIKUCHI, J ;
ASAKURA, T .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 247 (04) :541-546
[32]   STRUCTURE OF BOVINE PANCREATIC TRYPSIN-INHIBITOR - RESULTS OF JOINT NEUTRON AND X-RAY REFINEMENT OF CRYSTAL FORM-II [J].
WLODAWER, A ;
WALTER, J ;
HUBER, R ;
SJOLIN, L .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 180 (02) :301-329
[33]   MICROBIOLOGY TO 10,500 METERS IN THE DEEP-SEA [J].
YAYANOS, AA .
ANNUAL REVIEW OF MICROBIOLOGY, 1995, 49 :777-805