ArrayExpress: a public database of gene expression data at EBI

被引：54

作者：

Rocca-Serra, P ^{[1
]}

Brazma, A ^{[1
]}

Parkinson, H ^{[1
]}

Sarkans, U ^{[1
]}

Shojatalab, M ^{[1
]}

Contrino, S ^{[1
]}

Vilo, J ^{[1
]}

Abeygunawardena, N ^{[1
]}

Mukherjee, G ^{[1
]}

Holloway, E ^{[1
]}

Kapushesky, M ^{[1
]}

Kemmeren, P ^{[1
]}

Lara, GG ^{[1
]}

Oezcimen, A ^{[1
]}

Sansone, SA ^{[1
]}

机构：

[1] European Bioinformat Inst, EMBL Outstn Hinxton, Cambridge CB10 1SD, England

来源：

COMPTES RENDUS BIOLOGIES | 2003年 / 326卷 / 10-11期

关键词：

ArrayExpress; database; Expression Profiler; MAGE-ML; MIAME standard; microarray; MGED ontology;

D O I：

10.1016/j.crvi.2003.09.026

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

ArrayExpress is a public repository for microarray-based gene expression data, resulting from the implementation of the MACE object model to ensure accurate data structuring and the MIAME standard, which defines the annotation requirements. ArrayExpress accepts data as MAGE-ML files for direct submissions or data from MIAMExpress, the MIAME compliant web-based annotation and submission tool of EBI. A team of curators supports the submission process, providing assistance in data annotation. Data retrieval is performed through a dedicated web interface. Relevant results may be exported to Expression-Profiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress). (C) 2003 Published by Elsevier SAS on behalf of Academie des sciences.

引用

页码：1075 / 1078

页数：4

共 8 条

[1] The EMBL Nucleotide Sequence Database
Baker, W
van den Broek, A
Camon, E
Hingamp, P
Sterk, P
Stoesser, G
Tuli, MA
[J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 19 - 23
[2] Minimum information about a microarray experiment (MIAME) - toward standards for microarray data
Brazma, A
Hingamp, P
Quackenbush, J
Sherlock, G
Spellman, P
Stoeckert, C
Aach, J
Ansorge, W
Ball, CA
Causton, HC
Gaasterland, T
Glenisson, P
Holstege, FCP
Kim, IF
Markowitz, V
Matese, JC
Parkinson, H
Robinson, A
Sarkans, U
Schulze-Kremer, S
Stewart, J
Taylor, R
Vilo, J
Vingron, M
[J]. NATURE GENETICS, 2001, 29 (04) : 365 - 371
[3] One-stop shop for microarray data - Is a universal, public DNA-microarray database a realistic goal?
Brazma, A
Robinson, A
Cameron, G
Ashburner, M
[J]. NATURE, 2000, 403 (6771) : 699 - 700
[4] Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Edgar, R
Domrachev, M
Lash, AE
[J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 207 - 210
[5] Cancer comes under scrutiny in fresh genomics initiative
Knight, J
[J]. NATURE, 2001, 410 (6831) : 855 - 855
[6] Saal LH, 2002, GENOME BIOL, V3
[7] Spellman PT, 2002, GENOME BIOL, V3
[8] VILO J, IN PRESS ANAL GENE E

← 1 →