The EMBL Nucleotide Sequence Database

被引:116
作者
Baker, W [1 ]
van den Broek, A [1 ]
Camon, E [1 ]
Hingamp, P [1 ]
Sterk, P [1 ]
Stoesser, G [1 ]
Tuli, MA [1 ]
机构
[1] European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
关键词
D O I
10.1093/nar/28.1.19
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database (http://www.ebi.ac. uk/embl/index.html) is maintained at the European Bioinformatics Institute (EBI) in an international collaboration with the DNA Data Bank of Japan (DDBJ) and GenBank (USA), Data is exchanged amongst the collaborative databases on a daily basis, The-major contributors to the EMBL database ape individual authors and genome project groups. WEBIN is the preferred web-based submission system for individual submitters, whilst automatic procedures allow incorporation of sequence data from large-scale genome sequencing centres and from the European Patent Office (EPO), Database releases are produced quarterly, Network services allow free access to the most up-to-date data collection via Internet and WWW interfaces, EBI's Sequence Retrieval System (SRS) is a network browser for databanks in molecular biology, integrating and linking the main nucleotide and protein databases plus many specialised databases. For sequence similarity searching a variety of tools (e.g., BLITZ, FASTA, BLAST) are available which allow external users to compare their own sequences against the most currently available data in the EMBL Nucleotide Sequence Database and SWISS-PROT.
引用
收藏
页码:19 / 23
页数:5
相关论文
共 12 条
  • [1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [2] The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
    Bairoch, A
    Apweiler, R
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 38 - 42
  • [3] The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    Bairoch, A
    Apweiler, R
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 45 - 48
  • [4] GENMARK - PARALLEL GENE RECOGNITION FOR BOTH DNA STRANDS
    BORODOVSKY, M
    MCININCH, J
    [J]. COMPUTERS & CHEMISTRY, 1993, 17 (02): : 123 - 133
  • [5] Etzold T, 1996, METHOD ENZYMOL, V266, P114
  • [6] HEINEMEYER T, 1909, NUCLEIC ACIDS RES, V26, P362
  • [7] FINDING FLEXIBLE PATTERNS IN UNALIGNED PROTEIN SEQUENCES
    JONASSEN, I
    COLLINS, JF
    HIGGINS, DG
    [J]. PROTEIN SCIENCE, 1995, 4 (08) : 1587 - 1595
  • [8] Pearson W R, 1994, Methods Mol Biol, V24, P307
  • [9] The Eukaryotic Promoter Database (EPD)
    Périer, RC
    Praz, V
    Junier, T
    Bonnard, C
    Bucher, P
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 302 - 303
  • [10] The Eukaryotic Promoter Database EPD
    Perier, RC
    Junier, T
    Bucher, P
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 353 - 357