Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas

被引:1236
作者
Wu, Gang [2 ]
Broniscer, Alberto [3 ]
McEachron, Troy A. [4 ]
Lu, Charles [1 ]
Paugh, Barbara S. [4 ]
Becksfort, Jared [5 ]
Qu, Chunxu [5 ]
Ding, Li [1 ]
Huether, Robert [2 ]
Parker, Matthew [2 ]
Zhang, Junyuan [4 ]
Gajjar, Amar [3 ]
Dyer, Michael A. [4 ]
Mullighan, Charles G. [6 ]
Gilbertson, Richard J. [4 ]
Mardis, Elaine R. [1 ]
Wilson, Richard K. [1 ]
Downing, James R. [6 ]
Ellison, David W. [6 ]
Zhang, Jinghui [2 ]
Baker, Suzanne J. [4 ]
机构
[1] Washington Univ, Sch Med, Genome Inst, St Louis, MO 63130 USA
[2] St Jude Childrens Res Hosp, Dept Computat Biol, Memphis, TN 38105 USA
[3] St Jude Childrens Res Hosp, Dept Oncol, Memphis, TN 38105 USA
[4] St Jude Childrens Res Hosp, Dept Dev Neurobiol, Memphis, TN 38105 USA
[5] St Jude Childrens Res Hosp, Hartwell Ctr Biotechnol & Bioinformat, Memphis, TN 38105 USA
[6] St Jude Childrens Res Hosp, Dept Pathol, Memphis, TN 38105 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1038/ng.1102
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
To identify somatic mutations in pediatric diffuse intrinsic pontine glioma (DIPG), we performed whole-genome sequencing of DNA from seven DIPGs and matched germline tissue and targeted sequencing of an additional 43 DIPGs and 36 non-brainstem pediatric glioblastomas (non-BS-PGs). We found that 78% of DIPGs and 22% of non-BS-PGs contained a mutation in H3F3A, encoding histone H3.3, or in the related HIST1H3B, encoding histone H3.1, that caused a p. Lys27Met amino acid substitution in each protein. An additional 14% of non-BS-PGs had somatic mutations in H3F3A causing a p. Gly34Arg alteration.
引用
收藏
页码:251 / 253
页数:3
相关论文
共 14 条
  • [1] Homozygous loss of ADAM3A revealed by genome-wide analysis of pediatric high-grade glioma and diffuse intrinsic pontine gliomas
    Barrow, Jennifer
    Adamowicz-Brice, Martyna
    Cartmill, Maria
    MacArthur, Donald
    Lowe, James
    Robson, Keith
    Brundler, Marie-Anne
    Walker, David A.
    Coyle, Beth
    Grundy, Richard
    [J]. NEURO-ONCOLOGY, 2011, 13 (02) : 212 - 222
  • [2] High-resolution profiling of histone methylations in the human genome
    Barski, Artern
    Cuddapah, Suresh
    Cui, Kairong
    Roh, Tae-Young
    Schones, Dustin E.
    Wang, Zhibin
    Wei, Gang
    Chepelev, Iouri
    Zhao, Keji
    [J]. CELL, 2007, 129 (04) : 823 - 837
  • [3] A Distinct Spectrum of Copy Number Aberrations in Pediatric High-Grade Gliomas
    Bax, Dorine A.
    Mackay, Alan
    Little, Suzanne E.
    Carvalho, Diana
    Viana-Pereira, Marta
    Tamber, Narinder
    Grigoriadis, Anita E.
    Ashworth, Alan
    Reis, Rui M.
    Ellison, David W.
    Al-Sarraj, Safa
    Hargrave, Darren
    Jones, Chris
    [J]. CLINICAL CANCER RESEARCH, 2010, 16 (13) : 3368 - 3377
  • [4] Supratentorial high-grade astrocytoma and diffuse brainstem glioma: Two challenges for the pediatric oncologist
    Broniscer, A
    Gajjar, A
    [J]. ONCOLOGIST, 2004, 9 (02) : 197 - 206
  • [5] Histones: Annotating Chromatin
    Campos, Eric I.
    Reinberg, Danny
    [J]. ANNUAL REVIEW OF GENETICS, 2009, 43 : 559 - 599
  • [6] Histone onco-modifications
    Fullgrabe, J.
    Kavanagh, E.
    Joseph, B.
    [J]. ONCOGENE, 2011, 30 (31) : 3391 - 3403
  • [7] Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions
    Goldberg, Aaron D.
    Banaszynski, Laura A.
    Noh, Kyung-Min
    Lewis, Peter W.
    Elsaesser, Simon J.
    Stadler, Sonja
    Dewell, Scott
    Law, Martin
    Guo, Xingyi
    Li, Xuan
    Wen, Duancheng
    Chapgier, Ariane
    DeKelver, Russell C.
    Miller, Jeffrey C.
    Lee, Ya-Li
    Boydston, Elizabeth A.
    Holmes, Michael C.
    Gregory, Philip D.
    Greally, John M.
    Rafii, Shahin
    Yang, Chingwen
    Scambler, Peter J.
    Garrick, David
    Gibbons, Richard J.
    Higgs, Douglas R.
    Cristea, Ileana M.
    Urnov, Fyodor D.
    Zheng, Deyou
    Allis, C. David
    [J]. CELL, 2010, 140 (05) : 678 - 691
  • [8] An integrated genomic analysis of human glioblastoma Multiforme
    Parsons, D. Williams
    Jones, Sian
    Zhang, Xiaosong
    Lin, Jimmy Cheng-Ho
    Leary, Rebecca J.
    Angenendt, Philipp
    Mankoo, Parminder
    Carter, Hannah
    Siu, I-Mei
    Gallia, Gary L.
    Olivi, Alessandro
    McLendon, Roger
    Rasheed, B. Ahmed
    Keir, Stephen
    Nikolskaya, Tatiana
    Nikolsky, Yuri
    Busam, Dana A.
    Tekleab, Hanna
    Diaz, Luis A., Jr.
    Hartigan, James
    Smith, Doug R.
    Strausberg, Robert L.
    Marie, Suely Kazue Nagahashi
    Shinjo, Sueli Mieko Oba
    Yan, Hai
    Riggins, Gregory J.
    Bigner, Darell D.
    Karchin, Rachel
    Papadopoulos, Nick
    Parmigiani, Giovanni
    Vogelstein, Bert
    Velculescu, Victor E.
    Kinzler, Kenneth W.
    [J]. SCIENCE, 2008, 321 (5897) : 1807 - 1812
  • [9] Genome-Wide Analyses Identify Recurrent Amplifications of Receptor Tyrosine Kinases and Cell-Cycle Regulatory Genes in Diffuse Intrinsic Pontine Glioma
    Paugh, Barbara S.
    Broniscer, Alberto
    Qu, Chunxu
    Miller, Claudia P.
    Zhang, Junyuan
    Tatevossian, Ruth G.
    Olson, James M.
    Geyer, J. Russell
    Chi, Susan N.
    da Silva, Nasjla Saba
    Onar-Thomas, Arzu
    Baker, Justin N.
    Gajjar, Amar
    Ellison, David W.
    Baker, Suzanne J.
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2011, 29 (30) : 3999 - 4006
  • [10] Integrated Molecular Genetic Profiling of Pediatric High-Grade Gliomas Reveals Key Differences With the Adult Disease
    Paugh, Barbara S.
    Qu, Chunxu
    Jones, Chris
    Liu, Zhaoli
    Adamowicz-Brice, Martyna
    Zhang, Junyuan
    Bax, Dorine A.
    Coyle, Beth
    Barrow, Jennifer
    Hargrave, Darren
    Lowe, James
    Gajjar, Amar
    Zhao, Wei
    Broniscer, Alberto
    Ellison, David W.
    Grundy, Richard G.
    Baker, Suzanne J.
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2010, 28 (18) : 3061 - 3068