Potential of a mutant-based reverse genetic approach for functional genomics and molecular breeding in soybean

被引:38
作者
Anai, Toyoaki [1 ]
机构
[1] Saga Univ, Lab Plant Genet & Breeding, Fac Agr, Saga 8408502, Japan
关键词
reverse genetics; mutagenesis; TILLING; soybean; CHEMICALLY-INDUCED MUTATIONS; MAP-BASED CLONING; POINT MUTATIONS; DISCOVERY; ARABIDOPSIS; POPULATION; RESOURCE; MUTAGENESIS; RICE; IRRADIATION;
D O I
10.1270/jsbbs.61.462
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Mutant-based reverse genetics offers a powerful way to create novel mutant alleles at a selected locus. This approach makes it possible to directly identify plants that carry a specific modified gene from the nucleotide sequence data. Soybean [Glycine max (L.) Merr.] has a highly redundant paleopolyploid genome (approx. 1.1 Gb), which was completely sequenced in 2010. Using reverse genetics to support functional genomics studies designed to predict gene function would accelerate post-genomics research in soybean. Furthermore, the novel mutant alleles created by this approach would be useful genetic resources for improving various traits in soybean. A reverse genetic screening platform in soybean has been developed that combines more than 40,000 mutant lines with a high-throughput method, Targeting Local Lesions IN Genome (TILLING). In this review, the mutant-based reverse genetic approach based on this platform is described, and the likely evolution of this approach in the near future.
引用
收藏
页码:462 / 467
页数:6
相关论文
共 46 条
[21]   A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes [J].
Miyao, Akio ;
Iwasaki, Yukimoto ;
Kitano, Hidemi ;
Itoh, Jun-Ichi ;
Maekawa, Masahiko ;
Murata, Kazumasa ;
Yatou, Osamu ;
Nagato, Yasuo ;
Hirochika, Hirohiko .
PLANT MOLECULAR BIOLOGY, 2007, 63 (05) :625-635
[22]   Mutation detection using a novel plant endonuclease [J].
Oleykowski, CA ;
Mullins, CRB ;
Godwin, AK ;
Yeung, AT .
NUCLEIC ACIDS RESEARCH, 1998, 26 (20) :4597-4602
[23]   An Induced Mutation in Tomato eIF4E Leads to Immunity to Two Potyviruses [J].
Piron, Florence ;
Nicolai, Maryse ;
Minoia, Silvia ;
Piednoir, Elodie ;
Moretti, Andre ;
Salgues, Aurelie ;
Zamir, Dani ;
Caranta, Carole ;
Bendahmane, Abdelhafid .
PLOS ONE, 2010, 5 (06)
[24]   Mutant selection from progeny of gamma-ray-irradiated rice by DNA heteroduplex cleavage using Brassica petiole extract [J].
Sato, Yutaka ;
Shirasawa, Kenta ;
Takahashi, Yoshinobu ;
Nishimura, Minoru ;
Nishio, Takeshi .
BREEDING SCIENCE, 2006, 56 (02) :179-183
[25]   Use of N-methyl-N-nitrosourea treatment of fertilized egg cells for saturation mutagenesis of rice [J].
Satoh, Hikaru ;
Matsusaka, Hiroaki ;
Kumamaru, Toshihiro .
BREEDING SCIENCE, 2010, 60 (05) :475-485
[26]   A window into third-generation sequencing [J].
Schadt, Eric E. ;
Turner, Steve ;
Kasarskis, Andrew .
HUMAN MOLECULAR GENETICS, 2010, 19 :R227-R240
[27]   Genome sequence of the palaeopolyploid soybean [J].
Schmutz, Jeremy ;
Cannon, Steven B. ;
Schlueter, Jessica ;
Ma, Jianxin ;
Mitros, Therese ;
Nelson, William ;
Hyten, David L. ;
Song, Qijian ;
Thelen, Jay J. ;
Cheng, Jianlin ;
Xu, Dong ;
Hellsten, Uffe ;
May, Gregory D. ;
Yu, Yeisoo ;
Sakurai, Tetsuya ;
Umezawa, Taishi ;
Bhattacharyya, Madan K. ;
Sandhu, Devinder ;
Valliyodan, Babu ;
Lindquist, Erika ;
Peto, Myron ;
Grant, David ;
Shu, Shengqiang ;
Goodstein, David ;
Barry, Kerrie ;
Futrell-Griggs, Montona ;
Abernathy, Brian ;
Du, Jianchang ;
Tian, Zhixi ;
Zhu, Liucun ;
Gill, Navdeep ;
Joshi, Trupti ;
Libault, Marc ;
Sethuraman, Anand ;
Zhang, Xue-Cheng ;
Shinozaki, Kazuo ;
Nguyen, Henry T. ;
Wing, Rod A. ;
Cregan, Perry ;
Specht, James ;
Grimwood, Jane ;
Rokhsar, Dan ;
Stacey, Gary ;
Shoemaker, Randy C. ;
Jackson, Scott A. .
NATURE, 2010, 463 (7278) :178-183
[28]   Highly specific gene silencing by artificial microRNAs in Arabidopsis [J].
Schwab, R ;
Ossowski, S ;
Riester, M ;
Warthmann, N ;
Weigel, D .
PLANT CELL, 2006, 18 (05) :1121-1133
[29]   A high-throughput Arabidopsis reverse genetics system [J].
Sessions, A ;
Burke, E ;
Presting, G ;
Aux, G ;
McElver, J ;
Patton, D ;
Dietrich, B ;
Ho, P ;
Bacwaden, J ;
Ko, C ;
Clarke, JD ;
Cotton, D ;
Bullis, D ;
Snell, J ;
Miguel, T ;
Hutchison, D ;
Kimmerly, B ;
Mitzel, T ;
Katagiri, F ;
Glazebrook, J ;
Law, M ;
Goff, SA .
PLANT CELL, 2002, 14 (12) :2985-2994
[30]   High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene [J].
Shaked, H ;
Melamed-Bessudo, C ;
Levy, AA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (34) :12265-12269