Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)

被引:221
作者
Andrews, Genna L. [1 ]
Simons, Brigitte L. [2 ]
Young, J. Bryce [2 ]
Hawkridge, Adam M. [1 ]
Muddiman, David C. [1 ]
机构
[1] N Carolina State Univ, Dept Chem, WM Keck FT ICR Mass Spectrometry Lab, Raleigh, NC 27695 USA
[2] AB SCIEX, Concord, ON L4K 4 V8, Canada
基金
美国国家卫生研究院;
关键词
TRAP;
D O I
10.1021/ac200812d
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
The TripleTOF 5600 System, a hybrid quadrupole time-of-flight mass spectrometer, was evaluated to explore the key figures of merit in generating peptide and protein identifications that included spectral acquisition rates, data quality, proteome coverage, and biological depth. Employing a Saccharomyces cerevisiae tryptic digest, careful consideration of several performance features demonstrated that the speed of the TripleTOF contributed most to the resultant data. The TripleTOF system was operated with 8, 20, and 50 MS/MS events in an effort to compare with other MS technologies and to demonstrate the abilities of the instrument platform.
引用
收藏
页码:5442 / 5446
页数:5
相关论文
共 22 条
[1]   Mass spectrometry-based proteomics [J].
Aebersold, R ;
Mann, M .
NATURE, 2003, 422 (6928) :198-207
[2]   Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments [J].
Andrews, Genna L. ;
Dean, Ralph A. ;
Hawkridge, Adam M. ;
Muddiman, David C. .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2011, 22 (04) :773-783
[3]  
CAMPANA JE, 1987, ANAL INSTRUM, V16, P1
[4]  
Chernushevich I.V., 1997, Fundamentals, Instrumentation Applications
[5]   An introduction to quadrupole-time-of-flight mass spectrometry [J].
Chernushevich, IV ;
Loboda, AV ;
Thomson, BA .
JOURNAL OF MASS SPECTROMETRY, 2001, 36 (08) :849-865
[6]   Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS MS and database searching [J].
Clauser, KR ;
Baker, P ;
Burlingame, AL .
ANALYTICAL CHEMISTRY, 1999, 71 (14) :2871-2882
[7]   Review - Mass spectrometry and protein analysis [J].
Domon, B ;
Aebersold, R .
SCIENCE, 2006, 312 (5771) :212-217
[8]   Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry [J].
Elias, Joshua E. ;
Gygi, Steven P. .
NATURE METHODS, 2007, 4 (03) :207-214
[9]   Global analysis of protein expression in yeast [J].
Ghaemmaghami, S ;
Huh, W ;
Bower, K ;
Howson, RW ;
Belle, A ;
Dephoure, N ;
O'Shea, EK ;
Weissman, JS .
NATURE, 2003, 425 (6959) :737-741
[10]  
Guilhaus M, 2000, MASS SPECTROM REV, V19, P65, DOI 10.1002/(SICI)1098-2787(2000)19:2<65::AID-MAS1>3.0.CO