Sensitivity constraints in a chemical/biochemical highly responsive system

被引:9
作者
Acerenza, L
机构
[1] Sección Biofisica, Facultad de Ciencias, Universidad de la República, Montevideo, CP 11200
关键词
biocomputers; evolution of metabolism; metabolic design; sensitivity analysis;
D O I
10.1016/0303-2647(96)01606-1
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The sensitivity properties of a reaction scheme that can show highly sensitive responses is studied (see e.g. Okamoto, M., Sakai, T. and Hayashi, K., 1987, Biosystems 21, 1-11). This model was previously proposed to represent a 'chemical diode', a 'chemical McCulloch Pitts neuron', the cycling of a cofactor or the interconversion of a covalently modifiable enzyme. The sensitivity of the steady-state flux and concentrations with respect to changes in a rate is quantified by the control coefficient (CC). Two types of constraints reduce the sensitivity patterns that the model can exhibit: the structural and kinetic constraints. The existence of these constraints substantially reduces the number of CC that can show arbitrary values. For instance, under extreme kinetic constraints, the value of one CC suffices to determine the values of the other thirty nine. The dependent CC are obtained as a function of the independent CC in two particular cases: the chemical case, governed by simple mass action rate laws, and the biochemical case, catalyzed by saturable enzymes. It is shown that the biochemical case exhibits a qualitatively richer repertoire of sensitivity patterns than the chemical case. Although the strategy developed in this work is restricted to a particular model its application is general. The usefulness of this type of analysis in the solution of problems ranging from design of chemical/biochemical devices to evolution of metabolism is discussed.
引用
收藏
页码:109 / 116
页数:8
相关论文
共 11 条
[1]   METABOLIC CONTROL DESIGN [J].
ACERENZA, L .
JOURNAL OF THEORETICAL BIOLOGY, 1993, 165 (01) :63-85
[2]   AN AMPLIFIED SENSITIVITY ARISING FROM COVALENT MODIFICATION IN BIOLOGICAL-SYSTEMS [J].
GOLDBETER, A ;
KOSHLAND, DE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1981, 78 (11) :6840-6844
[3]   LINEAR STEADY-STATE TREATMENT OF ENZYMATIC CHAINS - GENERAL PROPERTIES, CONTROL AND EFFECTOR STRENGTH [J].
HEINRICH, R ;
RAPOPORT, TA .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1974, 42 (01) :89-95
[4]   CHEMICAL IMPLEMENTATION OF NEURAL NETWORKS AND TURING-MACHINES [J].
HJELMFELT, A ;
WEINBERGER, ED ;
ROSS, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (24) :10983-10987
[5]   ENZYME-ENZYME INTERACTIONS AND CONTROL ANALYSIS .1. THE CASE OF NONADDITIVITY - MONOMER-OLIGOMER ASSOCIATIONS [J].
KACSER, H ;
SAURO, HM ;
ACERENZA, L .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1990, 187 (03) :481-491
[6]  
Kacser H, 1973, Symp Soc Exp Biol, V27, P65
[7]   ADVANCES IN METABOLIC CONTROL ANALYSIS [J].
LIAO, JC ;
DELGADO, J .
BIOTECHNOLOGY PROGRESS, 1993, 9 (03) :221-233
[8]   SWITCHING MECHANISM OF A CYCLIC ENZYME-SYSTEM - ROLE AS A CHEMICAL DIODE [J].
OKAMOTO, M ;
SAKAI, T ;
HAYASHI, K .
BIOSYSTEMS, 1987, 21 (01) :1-11
[9]   METABOLIC CONTROL-THEORY - A STRUCTURAL APPROACH [J].
REDER, C .
JOURNAL OF THEORETICAL BIOLOGY, 1988, 135 (02) :175-201
[10]   ENZYME-ENZYME INTERACTIONS AND CONTROL ANALYSIS .2. THE CASE OF NONINDEPENDENCE - HETEROLOGOUS ASSOCIATIONS [J].
SAURO, HM ;
KACSER, H .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1990, 187 (03) :493-500