Here a virus, there a virus, everywhere the same virus?

被引:576
作者
Breitbart, M
Rohwer, F
机构
[1] San Diego State Univ, Dept Biol, San Diego, CA 92182 USA
[2] San Diego State Univ, Ctr Microbial Ecol, San Diego, CA 92182 USA
基金
美国国家科学基金会;
关键词
D O I
10.1016/j.tim.2005.04.003
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There are an estimated 10(31) viruses on Earth, most of which are phages that infect bacteria. Metagenomic analyses have shown that environmental viral communities are incredibly diverse. There are an estimated 5000 viral genotypes in 200 liters of seawater and possibly a million different viral genotypes in one kilogram of marine sediment. By contrast, some culturing and molecular studies have found that viruses move between different biomes. Together, these findings suggest that viral diversity could be high on a local scale but relatively limited globally. Also, by moving between environments, viruses can facilitate horizontal gene transfer.
引用
收藏
页码:278 / 284
页数:7
相关论文
共 77 条
[51]   Viruses from extreme thermal environments [J].
Rice, G ;
Stedman, K ;
Snyder, J ;
Wiedenheft, B ;
Willits, D ;
Brumfield, S ;
McDermott, T ;
Young, MJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (23) :13341-13345
[52]   DIFFERENTIATION BETWEEN HETEROTROPHIC AND PHOTOSYNTHETIC PLANKTON BY SIZE FRACTIONATION, GLUCOSE-UPTAKE, ATP AND CHLOROPHYLL CONTENT [J].
RIEMANN, B .
OIKOS, 1978, 31 (03) :358-367
[53]   Metagenomics: Genomic analysis of microbial communities [J].
Riesenfeld, CS ;
Schloss, PD ;
Handelsman, J .
ANNUAL REVIEW OF GENETICS, 2004, 38 :525-552
[54]   The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages [J].
Rohwer, F ;
Segall, A ;
Steward, G ;
Seguritan, V ;
Breitbart, M ;
Wolven, F ;
Azam, F .
LIMNOLOGY AND OCEANOGRAPHY, 2000, 45 (02) :408-418
[55]   Global phage diversity [J].
Rohwer, F .
CELL, 2003, 113 (02) :141-141
[56]   The Phage Proteomic Tree: a genome-based taxonomy for phage [J].
Rohwer, F ;
Edwards, R .
JOURNAL OF BACTERIOLOGY, 2002, 184 (16) :4529-4535
[57]   Movement of viruses between biomes [J].
Sano, E ;
Carlson, S ;
Wegley, L ;
Rohwer, F .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 70 (10) :5842-5846
[58]   ABUNDANCE AND PRODUCTIVITY OF HETEROTROPHIC NANOPLANKTON IN GEORGIA COASTAL WATERS [J].
SHERR, BF ;
SHERR, EB ;
NEWELL, SY .
JOURNAL OF PLANKTON RESEARCH, 1984, 6 (01) :195-202
[59]   Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments [J].
Short, CM ;
Suttle, CA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (01) :480-486
[60]  
Sniegowski PD, 2000, BIOESSAYS, V22, P1057, DOI 10.1002/1521-1878(200012)22:12&lt