The Ancient Evolutionary History of Polyomaviruses

被引：141

作者：

Buck, Christopher B. ^{[1
]}

Van Doorslaer, Koenraad ^{[2
]}

Peretti, Alberto ^{[1
]}

Geoghegan, Eileen M. ^{[1
]}

Tisza, Michael J. ^{[1
]}

An, Ping ^{[3
]}

Katz, Joshua P. ^{[3
]}

Pipas, James M. ^{[3
]}

McBride, Alison A. ^{[2
]}

Camus, Alvin C. ^{[4
]}

McDermott, Alexa J. ^{[5
]}

Dill, Jennifer A. ^{[4
]}

Delwart, Eric ^{[6
,7
]}

Ng, Terry F. F. ^{[6
,7
,12
]}

Farkas, Kata ^{[8
]}

Austin, Charlotte ^{[8
]}

Kraberger, Simona ^{[8
]}

Davison, William ^{[8
]}

Pastrana, Diana V. ^{[1
]}

Varsani, Arvind ^{[8
,9
,10
,11
]}

机构：

[1] NCI, Cellular Oncol Lab, NIH, Bethesda, MD 20892 USA

[2] NIAID, Viral Dis Lab, NIH, Bethesda, MD 20892 USA

[3] Univ Pittsburgh, Dept Biol Sci, Pittsburgh, PA 15260 USA

[4] Univ Georgia, Dept Pathol, Athens, GA 30602 USA

[5] Georgia Aquarium Inc, Dept Anim Hlth, Atlanta, GA USA

[6] Blood Syst Res Inst, San Francisco, CA USA

[7] Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94143 USA

[8] Univ Canterbury, Sch Biol Sci, Christchurch 1, New Zealand

[9] Univ Cape Town, Dept Clin Lab Sci, Struct Biol Res Unit, ZA-7925 Cape Town, South Africa

[10] Univ Florida, Dept Plant Pathol, Gainesville, FL 32611 USA

[11] Univ Florida, Emerging Pathogens Inst, Gainesville, FL USA

[12] Ctr Dis Control, DVD, NCIRD, Atlanta, GA 30333 USA

来源：

PLOS PATHOGENS | 2016年 / 12卷 / 04期

基金：

美国国家卫生研究院;

关键词：

MERKEL CELL POLYOMAVIRUS; GOOSE HEMORRHAGIC POLYOMAVIRUS; MULTIPLE SEQUENCE ALIGNMENT; AVIAN POLYOMAVIRUS; MOLECULAR PHYLOGENY; DIVERGENCE TIMES; T-ANTIGENS; MIDDLE T; VIRUS; IDENTIFICATION;

D O I：

10.1371/journal.ppat.1005574

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Polyomaviruses are a family of DNA tumor viruses that are known to infect mammals and birds. To investigate the deeper evolutionary history of the family, we used a combination of viral metagenomics, bioinformatics, and structural modeling approaches to identify and characterize polyomavirus sequences associated with fish and arthropods. Analyses drawing upon the divergent new sequences indicate that polyomaviruses have been gradually co-evolving with their animal hosts for at least half a billion years. Phylogenetic analyses of individual polyomavirus genes suggest that some modern polyomavirus species arose after ancient recombination events involving distantly related polyomavirus lineages. The improved evolutionary model provides a useful platform for developing a more accurate taxonomic classification system for the viral family Polyomaviridae.

引用

页数：26

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