Analysis of global control of Escherichia coli carbohydrate uptake

被引:39
作者
Kremling, Andreas [1 ]
Bettenbrock, Katja [1 ]
Gilles, Ernst Dieter [1 ]
机构
[1] Max Planck Inst Magdeburg, D-39106 Magdeburg, Germany
来源
BMC SYSTEMS BIOLOGY | 2007年 / 1卷
关键词
D O I
10.1186/1752-0509-1-42
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Global control influences the regulation of many individual subsystems by superimposed regulator proteins. A prominent example is the control of carbohydrate uptake systems by the transcription factor Crp in Escherichia coli. A detailed understanding of the coordination of the control of individual transporters offers possibilities to explore the potential of microorganisms e. g. in biotechnology. Results: An o.d.e. based mathematical model is presented that maps a physiological parameter the specific growth rate - to the sensor of the signal transduction unit, here a component of the bacterial phosphotransferase system (PTS), namely EIIA(Crr). The model describes the relation between the growth rate and the degree of phosphorylation of EIIA (crr) for a number of carbohydrates by a distinctive response curve, that differentiates between PTS transported carbohydrates and non-PTS carbohydrates. With only a small number of kinetic parameters, the model is able to describe a broad range of experimental steady-state and dynamical conditions. Conclusion: The steady-state characteristic presented shows a relationship between the growth rate and the output of the sensor system PTS. The glycolytic flux that is measured by this sensor is a good indicator to represent the nutritional status of the cell.
引用
收藏
页数:16
相关论文
共 21 条
[1]   A quantitative approach to catabolite repression in Escherichia coli [J].
Bettenbrock, K ;
Fischer, S ;
Kremling, A ;
Jahreis, K ;
Sauter, T ;
Gilles, ED .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (05) :2578-2584
[2]   Correlation between growth rates, EIIACrr phosphorylation, and intracellular cyclic AMP levels in Escherichia coli K-12 [J].
Bettenbrock, Katja ;
Sauter, Thomas ;
Jahreis, Knut ;
Kremling, Andreas ;
Lengeler, Joseph W. ;
Gilles, Ernst-Dieter .
JOURNAL OF BACTERIOLOGY, 2007, 189 (19) :6891-6900
[3]  
CHULAVATNATOL M, 1973, J BIOL CHEM, V248, P2712
[4]   Regulation of Escherichia coli adenylate cyclase activity during hexose phosphate transport [J].
Dumay, V ;
Danchin, A ;
Crasnier, M .
MICROBIOLOGY-UK, 1996, 142 :575-583
[5]   SENSITIVITY ANALYSIS OF PARAMETER COMBINATIONS [J].
HEARNE, JW .
APPLIED MATHEMATICAL MODELLING, 1985, 9 (02) :106-108
[6]   Inducer exclusion in Escherichia coli by non-PTS substrates:: the role of the PEP to pyruvate ratio in determining the phosphorylation state of enzyme IIAGlc [J].
Hogema, BM ;
Arents, JC ;
Bader, R ;
Eijkemans, K ;
Yoshida, H ;
Takahashi, H ;
Alba, H ;
Postma, PW .
MOLECULAR MICROBIOLOGY, 1998, 30 (03) :487-498
[7]   A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis [J].
Kao, KC ;
Tran, LM ;
Liao, JC .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (43) :36079-36087
[8]   Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism [J].
Kremling, A ;
Fischer, S ;
Sauter, T ;
Bettenbrock, K ;
Gilles, ED .
BIOSYSTEMS, 2004, 73 (01) :57-71
[9]   The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactose [J].
Kremling, A ;
Bettenbrock, K ;
Laube, B ;
Jahreis, K ;
Lengeler, JW ;
Gilles, ED .
METABOLIC ENGINEERING, 2001, 3 (04) :362-379
[10]  
MALONEY PC, 1990, MICROBIOL REV, V54, P1