Toward Sequencing cotton (Gossypium) Genomes

被引:361
作者
Chen, Z. Jeffrey [1 ]
Scheffler, Brian E.
Dennis, Elizabeth
Triplett, Barbara A. [1 ]
Zhang, Tianzhen [2 ,3 ]
Guo, Wangzhen [2 ,3 ]
Chen, Xiaoya [4 ]
Stelly, David M. [5 ]
Rabinowicz, Pablo D. [6 ,7 ]
Town, Christopher D. [8 ]
Arioli, Tony [9 ]
Brubaker, Curt [9 ]
Cantrell, Roy G. [10 ]
Lacape, Jean-Marc [11 ]
Ulloa, Mauricio [12 ]
Chee, Peng [13 ]
Gingle, Alan R. [14 ]
Haigler, Candace H. [15 ,16 ]
Percy, Richard [17 ]
Saha, Sukumar [18 ]
Wilkins, Thea [19 ]
Wright, Robert J. [19 ]
Van Deynze, Allen [20 ]
Zhu, Yuxian [21 ]
Yu, Shuxun [22 ]
Abdurakhmonov, Ibrokhim [23 ]
Katageri, Ishwarappa [24 ]
Kumar, P. Ananda [25 ]
Mehboob-ur-Rahman [26 ,27 ]
Zafar, Yusuf [26 ,27 ]
Yu, John Z. [28 ]
Kohel, Russell J. [28 ]
Wendel, Jonathan F. [29 ]
Paterson, Andrew H. [30 ]
机构
[1] USDA ARS, So Reg Res Ctr, POB 19687, New Orleans, LA 70124 USA
[2] Nanjing Agr Univ, Natl Key Lab Crop Genet & Germplasm Enhancement, Nanjing 210095, Peoples R China
[3] Nanjing Agr Univ, Cotton Res Inst, Nanjing 210095, Peoples R China
[4] Chinese Acad Sci, Inst Plant Physiol & Ecol, Shanghai 200032, Peoples R China
[5] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA
[6] Univ Maryland, Sch Med, Inst Genome Sci, Baltimore, MD 21201 USA
[7] Univ Maryland, Sch Med, Dept Biochem & Mol Biol, Baltimore, MD 21201 USA
[8] J. Craig Venter Inst, Rockville, MD 20850 USA
[9] Bayer Biosci NV, B-9052 Ghent, Belgium
[10] Monsanto Co, St Louis, MO 63167 USA
[11] CIRAD, UMR DAP, TA A 96 03, F-34398 Montpellier 5, France
[12] USDA ARS, Western Integrated Cropping Syst Res Unit, Shafter, CA 93263 USA
[13] Univ Georgia, Dept Crop & Soil Sci, Tifton, GA 31793 USA
[14] Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA
[15] N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA
[16] N Carolina State Univ, Dept Plant Biol, Raleigh, NC 27695 USA
[17] USDA ARS, Maricopa Agr Ctr, Maricopa, AZ 85239 USA
[18] USDA ARS, Genet & Precis Agr Unit, Mississippi State, MS 39762 USA
[19] Texas Tech Univ, Dept Plant & Soil Sci, Lubbock, TX 79409 USA
[20] Univ Calif Davis, Seed Biotechnol Ctr, Davis, CA 95616 USA
[21] Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
[22] Chinese Acad Agr Sci, Cotton Res Inst, Anyang 455112, Peoples R China
[23] Acad Sci Uzbek, Inst Genet & Plant Expt Biol, Tashkent 02151, Uzbekistan
[24] Univ Agr Sci, Dharwad 580005, Karnataka, India
[25] Natl Res Ctr Plant Biotechnol, New Delhi 110012, India
[26] Natl Inst Biotechnol & Genet Engn, Plant Genom Lab, Faisalabad, Pakistan
[27] Natl Inst Biotechnol & Genet Engn, Mol Breeding Lab, Faisalabad, Pakistan
[28] USDA ARS, Crop Germplasm Res Unit, College Stn, TX 77845 USA
[29] Iowa State Univ, Dept Ecol Evolut & Org Biol, Ames, IA 50011 USA
[30] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA
关键词
D O I
10.1104/pp.107.107672
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
引用
收藏
页码:1303 / 1310
页数:8
相关论文
共 51 条
[31]  
REINISCH AJ, 1994, GENETICS, V138, P829
[32]   Comparative genomics of Gossypium and Arabidopsis:: Unraveling the consequences of both ancient and recent polyploidy [J].
Rong, J ;
Bowers, JE ;
Schulze, SR ;
Waghmare, VN ;
Rogers, CJ ;
Pierce, GJ ;
Zhang, H ;
Estill, JC ;
Paterson, AH .
GENOME RESEARCH, 2005, 15 (09) :1198-1210
[33]   A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium) [J].
Rong, JK ;
Abbey, C ;
Bowers, JE ;
Brubaker, CL ;
Chang, C ;
Chee, PW ;
Delmonte, TA ;
Ding, XL ;
Garza, JJ ;
Marler, BS ;
Park, CH ;
Pierce, GJ ;
Rainey, KM ;
Rastogi, VK ;
Schulze, SR ;
Trolinder, NL ;
Wendel, JF ;
Wilkins, TA ;
Williams-Coplin, TD ;
Wing, RA ;
Wright, RJ ;
Zhao, XP ;
Zhu, LH ;
Paterson, AH .
GENETICS, 2004, 166 (01) :389-417
[34]  
Saha S., 2006, J COTTON SCI, V10, P146
[35]   Rate variation among nuclear genes and the age of polyploidy in Gossypium [J].
Senchina, DS ;
Alvarez, I ;
Cronn, RC ;
Liu, B ;
Rong, JK ;
Noyes, RD ;
Paterson, AH ;
Wing, RA ;
Wilkins, TA ;
Wendel, JF .
MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (04) :633-643
[36]   Genetic mapping of quantitative trait loci for fiber quality and yield trait by RIL approach in Upland cotton [J].
Shen, Xinlian ;
Guo, Wangzhen ;
Lu, Qiongxian ;
Zhu, Xiefei ;
Yuan, Youlu ;
Zhang, Tianzhen .
EUPHYTICA, 2007, 155 (03) :371-380
[37]   Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation [J].
Shi, YH ;
Zhu, SW ;
Mao, XZ ;
Feng, JX ;
Qin, YM ;
Zhang, L ;
Cheng, J ;
Wei, LP ;
Wang, ZY ;
Zhu, YX .
PLANT CELL, 2006, 18 (03) :651-664
[38]   Registration of 17 upland (Gossypium hirsutum) cotton germplasm lines disomic for different G. barbadense chromosome or arm substitutions [J].
Stelly, DM ;
Saha, S ;
Raska, DA ;
Jenkins, JN ;
McCarty, JC ;
Gutiérrez, OA .
CROP SCIENCE, 2005, 45 (06) :2663-2665
[39]   Analysis of gene expression in cotton fiber initials [J].
Taliercio, Earl W. ;
Boykin, Deborah .
BMC PLANT BIOLOGY, 2007, 7 (1)
[40]   A global assembly of cotton ESTs [J].
Udall, JA ;
Swanson, JM ;
Haller, K ;
Rapp, RA ;
Sparks, ME ;
Hatfield, J ;
Yu, YS ;
Wu, YR ;
Dowd, C ;
Arpat, AB ;
Sickler, BA ;
Wilkins, TA ;
Guo, JY ;
Chen, XY ;
Scheffler, J ;
Taliercio, E ;
Turley, R ;
McFadden, H ;
Payton, P ;
Klueva, N ;
Allen, R ;
Zhang, DS ;
Haigler, C ;
Wilkerson, C ;
Suo, JF ;
Schulze, SR ;
Pierce, ML ;
Essenberg, M ;
Kim, H ;
Llewellyn, DJ ;
Dennis, ES ;
Kudrna, D ;
Wing, R ;
Paterson, AH ;
Soderlund, C ;
Wendel, JF .
GENOME RESEARCH, 2006, 16 (03) :441-450