Quantitative evaluation of experimental NMR restraints

被引:72
作者
Nabuurs, SB
Spronk, CAEM
Krieger, E
Maassen, H
Vriend, G
Vuister, GW [1 ]
机构
[1] Univ Nijmegen, Dept Biophys Chem, NSRIM Ctr, Nijmegen, Netherlands
[2] Univ Nijmegen, Ctr Mol & Biomol Informat, Nijmegen, Netherlands
[3] Univ Nijmegen, Dept Math, Nijmegen, Netherlands
关键词
D O I
10.1021/ja035440f
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Nuclear Overhauser effect (NOE) data are an indispensable source of structural information in biomolecular structure determination by NMR spectroscopy. The number and type of experimental restraints used in the structure calculation and the RMS deviation of the restraints are usually reported. We present a new method for quantifying the information contained in the experimental NMR restraints. The method is based on a description of the structure in distance space and concepts derived from information theory. It allows for an objective description of the amount of available experimental information, which we show to be related to the positional uncertainty of the NMR ensemble. The measure of information presented is not affected by redundancy in the experimental restraints. Using various examples, we show that the method successfully identifies the crucial restraints in a structure determination: those restraints that are both important and unique. Finally, we demonstrate that the method can detect a wider range of redundancy in experimental datasets when compared to currently available methods. Because our method describes the quantitative evaluation of experimental NMR restraints, we propose the acronym QUEEN.
引用
收藏
页码:12026 / 12034
页数:9
相关论文
共 43 条
[41]   SOLUTION CONFORMATION OF PROTEINASE INHIBITOR-IIA FROM BULL SEMINAL PLASMA BY H-1 NUCLEAR MAGNETIC-RESONANCE AND DISTANCE GEOMETRY [J].
WILLIAMSON, MP ;
HAVEL, TF ;
WUTHRICH, K .
JOURNAL OF MOLECULAR BIOLOGY, 1985, 182 (02) :295-315
[42]   THE CHEMICAL-SHIFT INDEX - A FAST AND SIMPLE METHOD FOR THE ASSIGNMENT OF PROTEIN SECONDARY STRUCTURE THROUGH NMR-SPECTROSCOPY [J].
WISHART, DS ;
SYKES, BD ;
RICHARDS, FM .
BIOCHEMISTRY, 1992, 31 (06) :1647-1651
[43]  
Wuthrich K., 1986, NMR PROTEINS NUCL AC, DOI DOI 10.1051/EPN/19861701011