共 25 条
A physical and functional map of the human TNF-α NF-κB signal transduction pathway
被引:833
作者:

Bouwmeester, T
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Bauch, A
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Ruffner, H
论文数: 0 引用数: 0
h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Angrand, PO
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Bergamini, G
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Croughton, K
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Cruciat, C
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Eberhard, D
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Gagneur, J
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Ghidelli, S
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Hopf, C
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Huhse, B
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Mangano, R
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Michon, AM
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Schirle, M
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Schlegl, J
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Schwab, M
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机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Stein, MA
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Bauer, A
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Casari, G
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Drewes, G
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Gavin, AC
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Jackson, DB
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Joberty, G
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Neubauer, G
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Rick, J
论文数: 0 引用数: 0
h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Kuster, B
论文数: 0 引用数: 0
h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany

Superti-Furga, G
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h-index: 0
机构:
Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany
机构:
[1] Cellzome AG, D-69117 Heidelberg, Germany
关键词:
D O I:
10.1038/ncb1086
中图分类号:
Q2 [细胞生物学];
学科分类号:
071009 ;
090102 ;
摘要:
Signal transduction pathways are modular composites of functionally interdependent sets of proteins that act in a coordinated fashion to transform environmental information into a phenotypic response. The pro-inflammatory cytokine tumour necrosis factor (TNF)-alpha triggers a signalling cascade, converging on the activation of the transcription factor NF-kappaB, which forms the basis for numerous physiological and pathological processes. Here we report the mapping of a protein interaction network around 32 known and candidate TNF-alpha/ NF-kappaB pathway components by using an integrated approach comprising tandem affinity purification, liquid-chromatography tandem mass spectrometry, network analysis and directed functional perturbation studies using RNA interference. We identified 221 molecular associations and 80 previously unknown interactors, including 10 new functional modulators of the pathway. This systems approach provides significant insight into the logic of the TNF-alpha/NF-kappaB pathway and is generally applicable to other pathways relevant to human disease.
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页码:97 / +
页数:10
相关论文
共 25 条
[1]
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
[J].
Chen, CY
;
Gherzi, R
;
Ong, SE
;
Chan, EKL
;
Raijmakers, R
;
Pruijn, GJM
;
Stoecklin, G
;
Moroni, C
;
Mann, M
;
Karin, M
.
CELL,
2001, 107 (04)
:451-464

Chen, CY
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Gherzi, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Ong, SE
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Chan, EKL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Raijmakers, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Pruijn, GJM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

论文数: 引用数:
h-index:
机构:

Moroni, C
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Mann, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA

Karin, M
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA Univ Calif San Diego, Dept Pharmacol, Lab Gene Regulat & Signal Transduct, La Jolla, CA 92093 USA
[2]
TNF-induced recruitment and activation of the IKK complex require Cdc37 and Hsp90
[J].
Chen, GQ
;
Cao, P
;
Goeddel, DV
.
MOLECULAR CELL,
2002, 9 (02)
:401-410

Chen, GQ
论文数: 0 引用数: 0
h-index: 0
机构:
Tularik Inc, San Francisco, CA 94080 USA Tularik Inc, San Francisco, CA 94080 USA

Cao, P
论文数: 0 引用数: 0
h-index: 0
机构:
Tularik Inc, San Francisco, CA 94080 USA Tularik Inc, San Francisco, CA 94080 USA

Goeddel, DV
论文数: 0 引用数: 0
h-index: 0
机构:
Tularik Inc, San Francisco, CA 94080 USA Tularik Inc, San Francisco, CA 94080 USA
[3]
NF-κB signaling:: Many roads lead to Madrid
[J].
Dixit, V
;
Mak, TW
.
CELL,
2002, 111 (05)
:615-619

Dixit, V
论文数: 0 引用数: 0
h-index: 0
机构: Genentech Inc, San Francisco, CA 94080 USA

Mak, TW
论文数: 0 引用数: 0
h-index: 0
机构: Genentech Inc, San Francisco, CA 94080 USA
[4]
A subclass of Ras proteins that regulate the degradation of IκB
[J].
Fenwick, C
;
Na, SY
;
Voll, RE
;
Zhong, HH
;
Im, SY
;
Lee, JW
;
Ghosh, S
.
SCIENCE,
2000, 287 (5454)
:869-873

Fenwick, C
论文数: 0 引用数: 0
h-index: 0
机构: Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea

Na, SY
论文数: 0 引用数: 0
h-index: 0
机构: Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea

Voll, RE
论文数: 0 引用数: 0
h-index: 0
机构: Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea

Zhong, HH
论文数: 0 引用数: 0
h-index: 0
机构: Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea

Im, SY
论文数: 0 引用数: 0
h-index: 0
机构: Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea

Lee, JW
论文数: 0 引用数: 0
h-index: 0
机构: Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea

Ghosh, S
论文数: 0 引用数: 0
h-index: 0
机构:
Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea Chonnam Natl Univ, Ctr Ligand & Transcript, Kwangju 500757, South Korea
[5]
S9, a 19 S proteasome subunit interacting with ubiquitinated NF-κB2/p100
[J].
Fong, A
;
Zhang, MY
;
Neely, J
;
Sun, SC
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2002, 277 (43)
:40697-40702

Fong, A
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA

Zhang, MY
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA

Neely, J
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA

Sun, SC
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA
[6]
Genetic evidence for the essential role of β-transducin repeat-containing protein in the inducible processing of NF-κB2/p100
[J].
Fong, A
;
Sun, SC
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2002, 277 (25)
:22111-22114

Fong, A
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA

Sun, SC
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA Penn State Univ, Coll Med, Dept Microbiol & Immunol, Hershey, PA 17033 USA
[7]
Functional organization of the yeast proteome by systematic analysis of protein complexes
[J].
Gavin, AC
;
Bösche, M
;
Krause, R
;
Grandi, P
;
Marzioch, M
;
Bauer, A
;
Schultz, J
;
Rick, JM
;
Michon, AM
;
Cruciat, CM
;
Remor, M
;
Höfert, C
;
Schelder, M
;
Brajenovic, M
;
Ruffner, H
;
Merino, A
;
Klein, K
;
Hudak, M
;
Dickson, D
;
Rudi, T
;
Gnau, V
;
Bauch, A
;
Bastuck, S
;
Huhse, B
;
Leutwein, C
;
Heurtier, MA
;
Copley, RR
;
Edelmann, A
;
Querfurth, E
;
Rybin, V
;
Drewes, G
;
Raida, M
;
Bouwmeester, T
;
Bork, P
;
Seraphin, B
;
Kuster, B
;
Neubauer, G
;
Superti-Furga, G
.
NATURE,
2002, 415 (6868)
:141-147

Gavin, AC
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Bösche, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Krause, R
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Grandi, P
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Marzioch, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Bauer, A
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Schultz, J
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Rick, JM
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Michon, AM
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Cruciat, CM
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Remor, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Höfert, C
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Schelder, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Brajenovic, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Ruffner, H
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Merino, A
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Klein, K
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Hudak, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Dickson, D
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Rudi, T
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Gnau, V
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Bauch, A
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Bastuck, S
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Huhse, B
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Leutwein, C
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Heurtier, MA
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Copley, RR
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Edelmann, A
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Querfurth, E
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Rybin, V
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Drewes, G
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Raida, M
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Bouwmeester, T
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Bork, P
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Seraphin, B
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Kuster, B
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Neubauer, G
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany

Superti-Furga, G
论文数: 0 引用数: 0
h-index: 0
机构: Cellzome AG, D-69117 Heidelberg, Germany
[8]
NF-κB and rel proteins:: Evolutionarily conserved mediators of immune responses
[J].
Ghosh, S
;
May, MJ
;
Kopp, EB
.
ANNUAL REVIEW OF IMMUNOLOGY,
1998, 16
:225-260

Ghosh, S
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Sch Med, Howard Hughes Med Inst, Immunobiol Sect, New Haven, CT 06520 USA

May, MJ
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Sch Med, Howard Hughes Med Inst, Immunobiol Sect, New Haven, CT 06520 USA

Kopp, EB
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Sch Med, Howard Hughes Med Inst, Immunobiol Sect, New Haven, CT 06520 USA
[9]
Missing pieces in the NF-κB puzzle
[J].
Ghosh, S
;
Karin, M
.
CELL,
2002, 109
:S81-S96

Ghosh, S
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Sch Med, Howard Hughes Med Inst, Dept Mol Biophys & Biochem,Sect Immunobiol, New Haven, CT 06520 USA

Karin, M
论文数: 0 引用数: 0
h-index: 0
机构: Yale Univ, Sch Med, Howard Hughes Med Inst, Dept Mol Biophys & Biochem,Sect Immunobiol, New Haven, CT 06520 USA
[10]
The generation of nfkb2 p52:: mechanism and efficiency
[J].
Heusch, M
;
Lin, L
;
Geleziunas, R
;
Greene, WC
.
ONCOGENE,
1999, 18 (46)
:6201-6208

Heusch, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Gladstone Inst Virol & Immunol, San Francisco, CA 94141 USA

Lin, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Gladstone Inst Virol & Immunol, San Francisco, CA 94141 USA

Geleziunas, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Gladstone Inst Virol & Immunol, San Francisco, CA 94141 USA

Greene, WC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Gladstone Inst Virol & Immunol, San Francisco, CA 94141 USA