Refinement and standardization of synthetic biological parts and devices

被引:519
作者
Canton, Barry [1 ]
Labno, Anna [2 ,3 ]
Endy, Drew [1 ]
机构
[1] MIT, Dept Biol Engn, Cambridge, MA 02139 USA
[2] MIT, Dept Biol, Cambridge, MA 02139 USA
[3] MIT, Dept Phys, Cambridge, MA 02139 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
D O I
10.1038/nbt1413
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The ability to quickly and reliably engineer many-component systems from libraries of standard interchangeable parts is one hallmark of modern technologies. Whether the apparent complexity of living systems will permit biological engineers to develop similar capabilities is a pressing research question. We propose to adapt existing frameworks for describing engineered devices to biological objects in order to (i) direct the refinement and use of biological 'parts' and 'devices', (ii) support research on enabling reliable composition of standard biological parts and (iii) facilitate the development of abstraction hierarchies that simplify biological engineering. We use the resulting framework to describe one engineered biological device, a genetically encoded cell-cell communication receiver named BBa_F2620. The description of the receiver is summarized via a 'datasheet' similar to those widely used in engineering. The process of refinement and characterization leading to the BBa_F2620 datasheet may serve as a starting template for producing many standardized genetically encoded objects.
引用
收藏
页码:787 / 793
页数:7
相关论文
共 35 条
[21]   Plasticity of the cis-regulatory input function of a gene [J].
Mayo, AE ;
Setty, Y ;
Shavit, S ;
Zaslaver, A ;
Alon, U .
PLOS BIOLOGY, 2006, 4 (04) :555-561
[22]   AUTO-INDUCTION OF BACTERIAL LUCIFERASE - OCCURRENCE, MECHANISM AND SIGNIFICANCE [J].
NEALSON, KH .
ARCHIVES OF MICROBIOLOGY, 1977, 112 (01) :73-79
[23]   BACTERIAL BIOLUMINESCENCE - ITS CONTROL AND ECOLOGICAL SIGNIFICANCE [J].
NEALSON, KH ;
HASTINGS, JW .
MICROBIOLOGICAL REVIEWS, 1979, 43 (04) :496-518
[24]  
*REG STAND BIOL PA, BBAF2620
[25]   Gene regulation at the single-cell level [J].
Rosenfeld, N ;
Young, JW ;
Alon, U ;
Swain, PS ;
Elowitz, MB .
SCIENCE, 2005, 307 (5717) :1962-1965
[26]   Accurate prediction of gene feedback circuit behavior from component properties [J].
Rosenfeld, Nitzan ;
Young, Jonathan W. ;
Alon, Uri ;
Swain, Peter S. ;
Elowitz, Michael B. .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
[27]   Quorum sensing in Vibrio fischeri: Probing autoinducer-LuxR interactions with autoinducer analogs [J].
Schaefer, AL ;
Hanzelka, BL ;
Eberhard, A ;
Greenberg, EP .
JOURNAL OF BACTERIOLOGY, 1996, 178 (10) :2897-2901
[28]  
SELLERS W, 1864, J FRANKLIN I, V47, P344
[29]   A guide to choosing fluorescent proteins [J].
Shaner, NC ;
Steinbach, PA ;
Tsien, RY .
NATURE METHODS, 2005, 2 (12) :905-909
[30]  
*TEX INSTR, 1988, TTL LOG STAND TTL SC